Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01355 and AZOBR_RS01360 are separated by 65 nucleotides AZOBR_RS01360 and AZOBR_RS01365 are separated by 0 nucleotides AZOBR_RS01365 and AZOBR_RS01370 are separated by 125 nucleotides
AZOBR_RS01355: AZOBR_RS01355 - glycerophosphoryl diester phosphodiesterase, at 281,738 to 282,487
_RS01355
AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587
_RS01360
AZOBR_RS01365: AZOBR_RS01365 - membrane protein, at 283,588 to 284,142
_RS01365
AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161
_RS01370
Position (kb) 282
283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 281.854 kb on - strand, within AZOBR_RS01355 at 281.854 kb on - strand, within AZOBR_RS01355 at 281.992 kb on - strand, within AZOBR_RS01355 at 281.992 kb on - strand, within AZOBR_RS01355 at 282.502 kb on + strand at 282.519 kb on + strand at 282.519 kb on + strand at 282.523 kb on - strand at 282.644 kb on - strand at 282.664 kb on + strand, within AZOBR_RS01360 at 282.709 kb on + strand, within AZOBR_RS01360 at 282.718 kb on + strand, within AZOBR_RS01360 at 282.743 kb on - strand, within AZOBR_RS01360 at 282.946 kb on + strand, within AZOBR_RS01360 at 282.947 kb on - strand, within AZOBR_RS01360 at 283.342 kb on + strand, within AZOBR_RS01360 at 283.343 kb on - strand, within AZOBR_RS01360 at 283.462 kb on + strand, within AZOBR_RS01360 at 283.463 kb on - strand at 283.463 kb on - strand, within AZOBR_RS01360 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.812 kb on - strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.833 kb on - strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.076 kb on - strand, within AZOBR_RS01365 at 284.482 kb on - strand, within AZOBR_RS01370
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 281,854 - AZOBR_RS01355 0.15 -0.4 281,854 - AZOBR_RS01355 0.15 -0.2 281,992 - AZOBR_RS01355 0.34 -0.6 281,992 - AZOBR_RS01355 0.34 -1.5 282,502 + -2.0 282,519 + +0.7 282,519 + +0.2 282,523 - -1.4 282,644 - -2.3 282,664 + AZOBR_RS01360 0.11 -2.0 282,709 + AZOBR_RS01360 0.15 -1.0 282,718 + AZOBR_RS01360 0.16 -3.2 282,743 - AZOBR_RS01360 0.18 +0.3 282,946 + AZOBR_RS01360 0.38 -2.2 282,947 - AZOBR_RS01360 0.38 -1.4 283,342 + AZOBR_RS01360 0.76 -1.8 283,343 - AZOBR_RS01360 0.76 -2.6 283,462 + AZOBR_RS01360 0.88 -3.9 283,463 - +2.4 283,463 - AZOBR_RS01360 0.88 -2.2 283,763 + AZOBR_RS01365 0.32 +0.2 283,763 + AZOBR_RS01365 0.32 -1.6 283,812 - AZOBR_RS01365 0.40 -0.7 283,832 + AZOBR_RS01365 0.44 -1.2 283,832 + AZOBR_RS01365 0.44 +0.9 283,832 + AZOBR_RS01365 0.44 -0.6 283,833 - AZOBR_RS01365 0.44 -1.1 284,033 + AZOBR_RS01365 0.80 -1.9 284,033 + AZOBR_RS01365 0.80 +0.5 284,033 + AZOBR_RS01365 0.80 +1.1 284,033 + AZOBR_RS01365 0.80 +0.1 284,034 - AZOBR_RS01365 0.80 -1.2 284,034 - AZOBR_RS01365 0.80 -0.4 284,034 - AZOBR_RS01365 0.80 -0.4 284,076 - AZOBR_RS01365 0.88 +0.4 284,482 - AZOBR_RS01370 0.24 -0.2
Or see this region's nucleotide sequence