Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18745

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18740 and ABZR87_RS18745 are separated by 143 nucleotidesABZR87_RS18745 and ABZR87_RS18750 are separated by 161 nucleotides ABZR87_RS18740: ABZR87_RS18740 - LysR substrate-binding domain-containing protein, at 556,986 to 557,870 _RS18740 ABZR87_RS18745: ABZR87_RS18745 - hypothetical protein, at 558,014 to 558,535 _RS18745 ABZR87_RS18750: ABZR87_RS18750 - AMP-binding protein, at 558,697 to 560,394 _RS18750 Position (kb) 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 557.244 kb on + strand, within ABZR87_RS18740at 557.266 kb on - strand, within ABZR87_RS18740at 557.357 kb on - strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.640 kb on + strand, within ABZR87_RS18740at 557.641 kb on - strand, within ABZR87_RS18740at 557.939 kb on - strandat 557.939 kb on - strandat 558.086 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.218 kb on + strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.219 kb on - strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.220 kb on + strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.221 kb on - strand, within ABZR87_RS18745at 558.233 kb on + strand, within ABZR87_RS18745at 558.367 kb on - strand, within ABZR87_RS18745at 558.387 kb on + strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.388 kb on - strand, within ABZR87_RS18745at 558.584 kb on + strandat 558.584 kb on + strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.586 kb on + strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.587 kb on - strandat 558.633 kb on + strandat 558.757 kb on + strandat 559.235 kb on - strand, within ABZR87_RS18750at 559.235 kb on - strand, within ABZR87_RS18750at 559.235 kb on - strand, within ABZR87_RS18750at 559.298 kb on - strand, within ABZR87_RS18750at 559.298 kb on - strand, within ABZR87_RS18750at 559.298 kb on - strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.341 kb on + strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.342 kb on - strand, within ABZR87_RS18750at 559.381 kb on + strand, within ABZR87_RS18750at 559.381 kb on + strand, within ABZR87_RS18750at 559.382 kb on - strand, within ABZR87_RS18750at 559.419 kb on + strand, within ABZR87_RS18750at 559.419 kb on + strand, within ABZR87_RS18750at 559.419 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.498 kb on + strand, within ABZR87_RS18750at 559.504 kb on + strand, within ABZR87_RS18750at 559.504 kb on + strand, within ABZR87_RS18750at 559.505 kb on - strand, within ABZR87_RS18750at 559.505 kb on - strand, within ABZR87_RS18750at 559.505 kb on - strand, within ABZR87_RS18750

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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557,244 + ABZR87_RS18740 0.29 -0.4
557,266 - ABZR87_RS18740 0.32 -1.2
557,357 - ABZR87_RS18740 0.42 -2.3
557,598 + ABZR87_RS18740 0.69 -1.0
557,598 + ABZR87_RS18740 0.69 +0.0
557,598 + ABZR87_RS18740 0.69 -0.4
557,598 + ABZR87_RS18740 0.69 -0.3
557,598 + ABZR87_RS18740 0.69 -0.4
557,598 + ABZR87_RS18740 0.69 +1.8
557,599 - ABZR87_RS18740 0.69 -1.0
557,599 - ABZR87_RS18740 0.69 -2.7
557,599 - ABZR87_RS18740 0.69 -1.6
557,599 - ABZR87_RS18740 0.69 -0.4
557,599 - ABZR87_RS18740 0.69 -2.0
557,640 + ABZR87_RS18740 0.74 -0.8
557,641 - ABZR87_RS18740 0.74 -0.1
557,939 - -3.3
557,939 - -3.5
558,086 + ABZR87_RS18745 0.14 -0.9
558,218 + ABZR87_RS18745 0.39 +0.1
558,218 + ABZR87_RS18745 0.39 -0.2
558,218 + ABZR87_RS18745 0.39 -0.2
558,218 + ABZR87_RS18745 0.39 +0.1
558,218 + ABZR87_RS18745 0.39 +0.2
558,218 + ABZR87_RS18745 0.39 -0.3
558,219 - ABZR87_RS18745 0.39 -2.1
558,219 - ABZR87_RS18745 0.39 -1.3
558,219 - ABZR87_RS18745 0.39 -0.9
558,219 - ABZR87_RS18745 0.39 -1.3
558,219 - ABZR87_RS18745 0.39 -0.9
558,219 - ABZR87_RS18745 0.39 -3.0
558,220 + ABZR87_RS18745 0.39 -0.8
558,220 + ABZR87_RS18745 0.39 -0.7
558,220 + ABZR87_RS18745 0.39 -0.2
558,220 + ABZR87_RS18745 0.39 -0.1
558,221 - ABZR87_RS18745 0.40 -0.7
558,221 - ABZR87_RS18745 0.40 -1.7
558,221 - ABZR87_RS18745 0.40 -3.4
558,221 - ABZR87_RS18745 0.40 -0.4
558,221 - ABZR87_RS18745 0.40 -2.2
558,221 - ABZR87_RS18745 0.40 -2.5
558,221 - ABZR87_RS18745 0.40 -1.6
558,221 - ABZR87_RS18745 0.40 -2.3
558,233 + ABZR87_RS18745 0.42 -0.3
558,367 - ABZR87_RS18745 0.68 -0.0
558,387 + ABZR87_RS18745 0.71 -2.0
558,388 - ABZR87_RS18745 0.72 -0.6
558,388 - ABZR87_RS18745 0.72 +0.1
558,388 - ABZR87_RS18745 0.72 -1.5
558,388 - ABZR87_RS18745 0.72 -0.1
558,584 + +0.2
558,584 + +0.0
558,585 - -0.3
558,585 - +0.4
558,585 - +0.9
558,586 + +0.8
558,587 - -0.8
558,587 - -1.2
558,587 - -1.2
558,587 - -0.3
558,587 - -0.7
558,587 - +0.3
558,587 - -0.4
558,587 - -1.4
558,633 + -0.2
558,757 + +0.4
559,235 - ABZR87_RS18750 0.32 -0.7
559,235 - ABZR87_RS18750 0.32 -0.1
559,235 - ABZR87_RS18750 0.32 -0.2
559,298 - ABZR87_RS18750 0.35 -1.7
559,298 - ABZR87_RS18750 0.35 -0.4
559,298 - ABZR87_RS18750 0.35 -0.6
559,341 + ABZR87_RS18750 0.38 +0.1
559,341 + ABZR87_RS18750 0.38 +0.8
559,341 + ABZR87_RS18750 0.38 -0.9
559,341 + ABZR87_RS18750 0.38 -0.7
559,341 + ABZR87_RS18750 0.38 -0.2
559,341 + ABZR87_RS18750 0.38 -0.2
559,341 + ABZR87_RS18750 0.38 +0.7
559,341 + ABZR87_RS18750 0.38 -0.7
559,342 - ABZR87_RS18750 0.38 -0.0
559,342 - ABZR87_RS18750 0.38 +0.1
559,342 - ABZR87_RS18750 0.38 +1.0
559,342 - ABZR87_RS18750 0.38 -1.2
559,342 - ABZR87_RS18750 0.38 -0.2
559,342 - ABZR87_RS18750 0.38 -0.6
559,342 - ABZR87_RS18750 0.38 -0.4
559,381 + ABZR87_RS18750 0.40 -0.4
559,381 + ABZR87_RS18750 0.40 -1.0
559,382 - ABZR87_RS18750 0.40 +0.5
559,419 + ABZR87_RS18750 0.43 -0.1
559,419 + ABZR87_RS18750 0.43 -0.0
559,419 + ABZR87_RS18750 0.43 -0.3
559,498 + ABZR87_RS18750 0.47 +0.9
559,498 + ABZR87_RS18750 0.47 -0.1
559,498 + ABZR87_RS18750 0.47 -0.1
559,498 + ABZR87_RS18750 0.47 +0.2
559,498 + ABZR87_RS18750 0.47 +0.7
559,498 + ABZR87_RS18750 0.47 -0.7
559,498 + ABZR87_RS18750 0.47 -0.2
559,504 + ABZR87_RS18750 0.48 +0.3
559,504 + ABZR87_RS18750 0.48 -1.1
559,505 - ABZR87_RS18750 0.48 -1.0
559,505 - ABZR87_RS18750 0.48 -0.4
559,505 - ABZR87_RS18750 0.48 +0.6

Or see this region's nucleotide sequence