Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18735

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18730 and ABZR87_RS18735 are separated by 546 nucleotidesABZR87_RS18735 and ABZR87_RS18740 are separated by 131 nucleotides ABZR87_RS18730: ABZR87_RS18730 - redoxin domain-containing protein, at 555,043 to 555,549 _RS18730 ABZR87_RS18735: ABZR87_RS18735 - sulfite exporter TauE/SafE family protein, at 556,096 to 556,854 _RS18735 ABZR87_RS18740: ABZR87_RS18740 - LysR substrate-binding domain-containing protein, at 556,986 to 557,870 _RS18740 Position (kb) 556 557Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 555.220 kb on + strand, within ABZR87_RS18730at 555.221 kb on - strand, within ABZR87_RS18730at 555.388 kb on + strand, within ABZR87_RS18730at 555.389 kb on - strand, within ABZR87_RS18730at 555.462 kb on + strand, within ABZR87_RS18730at 555.462 kb on + strand, within ABZR87_RS18730at 555.486 kb on + strand, within ABZR87_RS18730at 555.486 kb on + strand, within ABZR87_RS18730at 555.524 kb on + strandat 555.524 kb on + strandat 555.524 kb on + strandat 555.525 kb on - strandat 555.525 kb on - strandat 555.548 kb on - strandat 555.548 kb on - strandat 555.586 kb on - strandat 555.608 kb on + strandat 555.608 kb on + strandat 555.608 kb on + strandat 555.608 kb on + strandat 555.609 kb on - strandat 555.609 kb on - strandat 555.610 kb on + strandat 555.610 kb on + strandat 555.611 kb on - strandat 555.695 kb on + strandat 555.696 kb on - strandat 555.754 kb on + strandat 555.755 kb on - strandat 555.790 kb on + strandat 555.831 kb on + strandat 555.831 kb on + strandat 555.831 kb on + strandat 555.832 kb on - strandat 555.832 kb on - strandat 555.921 kb on + strandat 555.921 kb on + strandat 555.921 kb on + strandat 555.921 kb on + strandat 555.922 kb on - strandat 555.922 kb on - strandat 555.922 kb on - strandat 555.922 kb on - strandat 555.922 kb on - strandat 555.945 kb on - strandat 555.945 kb on - strandat 556.013 kb on + strandat 556.013 kb on + strandat 556.013 kb on + strandat 556.014 kb on - strandat 556.014 kb on - strandat 556.169 kb on + strandat 556.212 kb on - strand, within ABZR87_RS18735at 556.410 kb on - strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.418 kb on + strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.419 kb on - strand, within ABZR87_RS18735at 556.713 kb on + strand, within ABZR87_RS18735at 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.930 kb on + strandat 556.931 kb on - strandat 556.931 kb on - strandat 556.931 kb on - strandat 556.931 kb on - strandat 557.244 kb on + strand, within ABZR87_RS18740at 557.266 kb on - strand, within ABZR87_RS18740at 557.357 kb on - strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.598 kb on + strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.599 kb on - strand, within ABZR87_RS18740at 557.640 kb on + strand, within ABZR87_RS18740at 557.641 kb on - strand, within ABZR87_RS18740

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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555,220 + ABZR87_RS18730 0.35 -1.0
555,221 - ABZR87_RS18730 0.35 +0.4
555,388 + ABZR87_RS18730 0.68 +1.5
555,389 - ABZR87_RS18730 0.68 -0.5
555,462 + ABZR87_RS18730 0.83 -0.4
555,462 + ABZR87_RS18730 0.83 -0.5
555,486 + ABZR87_RS18730 0.87 +0.4
555,486 + ABZR87_RS18730 0.87 +0.5
555,524 + +0.6
555,524 + +0.5
555,524 + +0.0
555,525 - -0.4
555,525 - +0.2
555,548 - +0.1
555,548 - +0.6
555,586 - -0.5
555,608 + -0.5
555,608 + +0.8
555,608 + +0.7
555,608 + -1.0
555,609 - -0.4
555,609 - -0.3
555,610 + +0.7
555,610 + -0.3
555,611 - +0.1
555,695 + -0.3
555,696 - -0.7
555,754 + -0.6
555,755 - -0.1
555,790 + +1.6
555,831 + +1.1
555,831 + +0.1
555,831 + +0.5
555,832 - -0.3
555,832 - -0.9
555,921 + +0.5
555,921 + +0.6
555,921 + +0.4
555,921 + -0.0
555,922 - +0.5
555,922 - +0.1
555,922 - +0.1
555,922 - +0.2
555,922 - -0.2
555,945 - +0.5
555,945 - -0.0
556,013 + -0.5
556,013 + +0.3
556,013 + +0.2
556,014 - +0.4
556,014 - +1.9
556,169 + +0.7
556,212 - ABZR87_RS18735 0.15 -2.3
556,410 - ABZR87_RS18735 0.41 +0.1
556,418 + ABZR87_RS18735 0.42 -0.0
556,418 + ABZR87_RS18735 0.42 +0.7
556,418 + ABZR87_RS18735 0.42 +0.0
556,418 + ABZR87_RS18735 0.42 -0.7
556,418 + ABZR87_RS18735 0.42 -0.2
556,418 + ABZR87_RS18735 0.42 +0.4
556,419 - ABZR87_RS18735 0.43 -1.8
556,419 - ABZR87_RS18735 0.43 -0.8
556,419 - ABZR87_RS18735 0.43 -2.7
556,419 - ABZR87_RS18735 0.43 -2.6
556,419 - ABZR87_RS18735 0.43 -1.6
556,419 - ABZR87_RS18735 0.43 -2.4
556,419 - ABZR87_RS18735 0.43 -3.1
556,419 - ABZR87_RS18735 0.43 -2.4
556,713 + ABZR87_RS18735 0.81 -0.3
556,930 + +0.1
556,930 + -0.3
556,930 + +0.6
556,930 + -0.1
556,930 + +0.1
556,931 - -4.8
556,931 - -3.8
556,931 - -2.5
556,931 - -3.3
557,244 + ABZR87_RS18740 0.29 -0.4
557,266 - ABZR87_RS18740 0.32 -1.2
557,357 - ABZR87_RS18740 0.42 -2.3
557,598 + ABZR87_RS18740 0.69 -1.0
557,598 + ABZR87_RS18740 0.69 +0.0
557,598 + ABZR87_RS18740 0.69 -0.4
557,598 + ABZR87_RS18740 0.69 -0.3
557,598 + ABZR87_RS18740 0.69 -0.4
557,598 + ABZR87_RS18740 0.69 +1.8
557,599 - ABZR87_RS18740 0.69 -1.0
557,599 - ABZR87_RS18740 0.69 -2.7
557,599 - ABZR87_RS18740 0.69 -1.6
557,599 - ABZR87_RS18740 0.69 -0.4
557,599 - ABZR87_RS18740 0.69 -2.0
557,640 + ABZR87_RS18740 0.74 -0.8
557,641 - ABZR87_RS18740 0.74 -0.1

Or see this region's nucleotide sequence