Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02354 and SMc02355 overlap by 14 nucleotides SMc02355 and SMc02356 are separated by 120 nucleotides SMc02356 and SMc02357 are separated by 51 nucleotides SMc02357 and SMc02358 overlap by 8 nucleotides
SMc02354: SMc02354 - hypothetical protein, at 2,775,918 to 2,776,733
SMc02354
SMc02355: SMc02355 - hypothetical protein, at 2,776,720 to 2,777,373
SMc02355
SMc02356: SMc02356 - branched chain amino acid ABC transporter periplasmic protein, at 2,777,494 to 2,778,666
SMc02356
SMc02357: SMc02357 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,778,718 to 2,779,452
SMc02357
SMc02358: SMc02358 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein, at 2,779,445 to 2,780,152
SMc02358
Position (kb)
2777
2778
2779 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2776.543 kb on - strand, within SMc02354 at 2776.566 kb on + strand, within SMc02354 at 2776.867 kb on + strand, within SMc02355 at 2776.867 kb on + strand, within SMc02355 at 2776.867 kb on + strand, within SMc02355 at 2776.867 kb on + strand, within SMc02355 at 2776.868 kb on - strand, within SMc02355 at 2776.874 kb on - strand, within SMc02355 at 2777.012 kb on - strand, within SMc02355 at 2777.055 kb on + strand, within SMc02355 at 2777.056 kb on - strand, within SMc02355 at 2777.056 kb on - strand, within SMc02355 at 2777.056 kb on - strand, within SMc02355 at 2777.056 kb on - strand, within SMc02355 at 2777.060 kb on + strand, within SMc02355 at 2777.060 kb on + strand, within SMc02355 at 2777.143 kb on + strand, within SMc02355 at 2777.143 kb on + strand, within SMc02355 at 2777.144 kb on - strand, within SMc02355 at 2777.177 kb on + strand, within SMc02355 at 2777.177 kb on + strand, within SMc02355 at 2777.177 kb on + strand, within SMc02355 at 2777.178 kb on - strand, within SMc02355 at 2777.242 kb on + strand, within SMc02355 at 2777.242 kb on + strand, within SMc02355 at 2777.324 kb on - strand at 2777.324 kb on - strand at 2777.372 kb on - strand at 2777.402 kb on + strand at 2777.402 kb on + strand at 2777.402 kb on + strand at 2777.402 kb on + strand at 2777.403 kb on - strand at 2777.403 kb on - strand at 2777.403 kb on - strand at 2777.403 kb on - strand at 2777.411 kb on + strand at 2777.411 kb on + strand at 2777.411 kb on + strand at 2777.411 kb on + strand at 2777.480 kb on + strand at 2777.480 kb on + strand at 2777.662 kb on + strand, within SMc02356 at 2777.662 kb on + strand, within SMc02356 at 2777.663 kb on - strand, within SMc02356 at 2777.663 kb on - strand, within SMc02356 at 2777.934 kb on + strand, within SMc02356 at 2777.995 kb on + strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2777.996 kb on - strand, within SMc02356 at 2778.022 kb on + strand, within SMc02356 at 2778.022 kb on + strand, within SMc02356 at 2778.023 kb on - strand, within SMc02356 at 2778.023 kb on - strand, within SMc02356 at 2778.024 kb on + strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.025 kb on - strand, within SMc02356 at 2778.097 kb on + strand, within SMc02356 at 2778.097 kb on + strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.098 kb on - strand, within SMc02356 at 2778.185 kb on - strand, within SMc02356 at 2778.262 kb on + strand, within SMc02356 at 2778.262 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.316 kb on + strand, within SMc02356 at 2778.317 kb on - strand, within SMc02356 at 2778.317 kb on - strand, within SMc02356 at 2778.330 kb on + strand, within SMc02356 at 2778.383 kb on - strand, within SMc02356 at 2778.383 kb on - strand, within SMc02356 at 2778.439 kb on - strand, within SMc02356 at 2778.640 kb on - strand at 2778.657 kb on + strand at 2778.984 kb on - strand, within SMc02357 at 2778.984 kb on - strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2778.999 kb on + strand, within SMc02357 at 2779.000 kb on - strand, within SMc02357 at 2779.138 kb on + strand, within SMc02357 at 2779.138 kb on + strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.139 kb on - strand, within SMc02357 at 2779.423 kb on + strand at 2779.423 kb on + strand at 2779.423 kb on + strand at 2779.424 kb on - strand at 2779.455 kb on + strand at 2779.456 kb on - strand at 2779.476 kb on - strand at 2779.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,776,543 - SMc02354 0.77 -0.5 2,776,566 + SMc02354 0.79 +0.9 2,776,867 + SMc02355 0.22 +1.2 2,776,867 + SMc02355 0.22 -0.2 2,776,867 + SMc02355 0.22 +1.0 2,776,867 + SMc02355 0.22 +0.5 2,776,868 - SMc02355 0.23 +0.4 2,776,874 - SMc02355 0.24 +1.0 2,777,012 - SMc02355 0.45 +0.2 2,777,055 + SMc02355 0.51 +0.5 2,777,056 - SMc02355 0.51 -0.4 2,777,056 - SMc02355 0.51 +0.5 2,777,056 - SMc02355 0.51 -0.6 2,777,056 - SMc02355 0.51 +3.1 2,777,060 + SMc02355 0.52 -0.0 2,777,060 + SMc02355 0.52 +0.5 2,777,143 + SMc02355 0.65 -0.3 2,777,143 + SMc02355 0.65 +0.2 2,777,144 - SMc02355 0.65 +0.7 2,777,177 + SMc02355 0.70 -1.3 2,777,177 + SMc02355 0.70 -0.1 2,777,177 + SMc02355 0.70 -0.1 2,777,178 - SMc02355 0.70 -0.0 2,777,242 + SMc02355 0.80 +0.1 2,777,242 + SMc02355 0.80 +0.1 2,777,324 - -0.1 2,777,324 - +0.3 2,777,372 - +2.5 2,777,402 + -0.0 2,777,402 + +0.5 2,777,402 + +0.3 2,777,402 + +1.5 2,777,403 - -0.3 2,777,403 - -0.2 2,777,403 - -1.1 2,777,403 - -0.0 2,777,411 + -1.0 2,777,411 + +0.4 2,777,411 + +0.8 2,777,411 + +1.3 2,777,480 + -1.5 2,777,480 + +0.2 2,777,662 + SMc02356 0.14 -0.4 2,777,662 + SMc02356 0.14 -0.9 2,777,663 - SMc02356 0.14 +0.1 2,777,663 - SMc02356 0.14 +0.7 2,777,934 + SMc02356 0.38 -1.0 2,777,995 + SMc02356 0.43 -0.6 2,777,996 - SMc02356 0.43 -1.2 2,777,996 - SMc02356 0.43 +0.2 2,777,996 - SMc02356 0.43 -0.3 2,777,996 - SMc02356 0.43 -0.2 2,778,022 + SMc02356 0.45 -0.3 2,778,022 + SMc02356 0.45 +0.2 2,778,023 - SMc02356 0.45 -2.1 2,778,023 - SMc02356 0.45 -0.2 2,778,024 + SMc02356 0.45 +0.3 2,778,025 - SMc02356 0.45 -1.8 2,778,025 - SMc02356 0.45 -0.2 2,778,025 - SMc02356 0.45 +0.5 2,778,025 - SMc02356 0.45 -0.1 2,778,097 + SMc02356 0.51 +3.4 2,778,097 + SMc02356 0.51 -0.3 2,778,098 - SMc02356 0.51 -0.3 2,778,098 - SMc02356 0.51 -0.4 2,778,098 - SMc02356 0.51 -1.2 2,778,185 - SMc02356 0.59 -0.3 2,778,262 + SMc02356 0.65 +0.3 2,778,262 + SMc02356 0.65 +0.5 2,778,316 + SMc02356 0.70 -0.2 2,778,316 + SMc02356 0.70 -0.8 2,778,316 + SMc02356 0.70 -1.5 2,778,317 - SMc02356 0.70 -0.2 2,778,317 - SMc02356 0.70 -0.5 2,778,330 + SMc02356 0.71 -0.9 2,778,383 - SMc02356 0.76 -0.5 2,778,383 - SMc02356 0.76 +0.5 2,778,439 - SMc02356 0.81 -0.1 2,778,640 - -0.1 2,778,657 + -1.1 2,778,984 - SMc02357 0.36 -0.1 2,778,984 - SMc02357 0.36 -0.1 2,778,999 + SMc02357 0.38 +0.2 2,778,999 + SMc02357 0.38 +0.6 2,778,999 + SMc02357 0.38 +0.7 2,778,999 + SMc02357 0.38 -0.4 2,779,000 - SMc02357 0.38 +0.1 2,779,138 + SMc02357 0.57 +1.6 2,779,138 + SMc02357 0.57 -0.2 2,779,139 - SMc02357 0.57 +0.1 2,779,139 - SMc02357 0.57 +1.0 2,779,139 - SMc02357 0.57 +0.3 2,779,423 + +0.2 2,779,423 + +1.8 2,779,423 + -0.5 2,779,424 - -2.3 2,779,455 + -0.1 2,779,456 - +0.6 2,779,476 - +0.0 2,779,476 - -0.2
Or see this region's nucleotide sequence