Strain Fitness in Sinorhizobium meliloti 1021 around SMc02264

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02263 and SMc02264 are separated by 189 nucleotidesSMc02264 and SMc02265 are separated by 93 nucleotides SMc02263: SMc02263 - hypothetical protein, at 627,821 to 629,434 SMc02263 SMc02264: SMc02264 - hypothetical protein, at 629,624 to 630,016 SMc02264 SMc02265: SMc02265 - preprotein translocase subunit SecD/SecF, at 630,110 to 632,644 SMc02265 Position (kb) 629 630 631Strain fitness (log2 ratio) -1 0 1 2at 628.670 kb on + strand, within SMc02263at 628.991 kb on + strand, within SMc02263at 629.055 kb on - strand, within SMc02263at 629.055 kb on - strand, within SMc02263at 629.109 kb on + strand, within SMc02263at 629.109 kb on + strand, within SMc02263at 629.109 kb on + strand, within SMc02263at 629.110 kb on - strand, within SMc02263at 629.110 kb on - strand, within SMc02263at 629.231 kb on + strand, within SMc02263at 629.231 kb on + strand, within SMc02263at 629.231 kb on + strand, within SMc02263at 629.231 kb on + strand, within SMc02263at 629.232 kb on - strand, within SMc02263at 629.232 kb on - strand, within SMc02263at 629.232 kb on - strand, within SMc02263at 629.232 kb on - strand, within SMc02263at 629.307 kb on - strandat 629.307 kb on - strandat 629.755 kb on + strand, within SMc02264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
628,670 + SMc02263 0.53 +0.1
628,991 + SMc02263 0.72 -1.7
629,055 - SMc02263 0.76 -0.7
629,055 - SMc02263 0.76 +0.3
629,109 + SMc02263 0.80 -1.6
629,109 + SMc02263 0.80 +1.0
629,109 + SMc02263 0.80 +1.0
629,110 - SMc02263 0.80 +0.3
629,110 - SMc02263 0.80 +1.8
629,231 + SMc02263 0.87 +0.5
629,231 + SMc02263 0.87 +0.7
629,231 + SMc02263 0.87 +0.7
629,231 + SMc02263 0.87 +1.1
629,232 - SMc02263 0.87 +0.3
629,232 - SMc02263 0.87 +0.5
629,232 - SMc02263 0.87 -0.2
629,232 - SMc02263 0.87 +1.2
629,307 - -0.6
629,307 - +0.0
629,755 + SMc02264 0.33 +1.1

Or see this region's nucleotide sequence