Strain Fitness in Sinorhizobium meliloti 1021 around SMc00924

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00925 and SMc00924 are separated by 190 nucleotidesSMc00924 and SMc00923 are separated by 285 nucleotidesSMc00923 and SMc00922 are separated by 74 nucleotides SMc00925: SMc00925 - signal peptide protein, at 857,762 to 858,457 SMc00925 SMc00924: SMc00924 - hypothetical protein, at 858,648 to 859,388 SMc00924 SMc00923: SMc00923 - DNA-3-methyladenine DNA glycosylase, at 859,674 to 860,309 SMc00923 SMc00922: SMc00922 - transporter transmembrane protein, at 860,384 to 861,841 SMc00922 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.877 kb on + strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.878 kb on - strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.994 kb on + strand, within SMc00925at 857.995 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.001 kb on - strand, within SMc00925at 858.217 kb on - strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.222 kb on + strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.223 kb on - strand, within SMc00925at 858.295 kb on - strand, within SMc00925at 858.401 kb on - strandat 858.401 kb on - strandat 858.532 kb on + strandat 858.532 kb on + strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.533 kb on - strandat 858.560 kb on + strandat 858.629 kb on + strandat 858.629 kb on + strandat 858.649 kb on + strandat 858.649 kb on + strandat 858.650 kb on - strandat 858.650 kb on - strandat 858.651 kb on + strandat 858.688 kb on + strandat 858.782 kb on - strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.795 kb on + strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.796 kb on - strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.799 kb on + strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.800 kb on - strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 858.856 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.015 kb on + strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.016 kb on - strand, within SMc00924at 859.073 kb on - strand, within SMc00924at 859.219 kb on - strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.231 kb on + strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.232 kb on - strand, within SMc00924at 859.312 kb on + strand, within SMc00924at 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.354 kb on - strandat 859.402 kb on + strandat 859.586 kb on - strandat 859.603 kb on + strandat 859.603 kb on + strandat 859.604 kb on - strandat 859.746 kb on + strand, within SMc00923at 859.756 kb on - strand, within SMc00923at 859.987 kb on + strand, within SMc00923at 859.988 kb on - strand, within SMc00923at 860.052 kb on + strand, within SMc00923at 860.053 kb on - strand, within SMc00923at 860.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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857,877 + SMc00925 0.17 -1.8
857,877 + SMc00925 0.17 -0.9
857,877 + SMc00925 0.17 +1.5
857,877 + SMc00925 0.17 +0.5
857,878 - SMc00925 0.17 +0.3
857,878 - SMc00925 0.17 -1.2
857,994 + SMc00925 0.33 +0.5
857,994 + SMc00925 0.33 -0.7
857,995 - SMc00925 0.33 -0.4
858,001 - SMc00925 0.34 -1.4
858,001 - SMc00925 0.34 -0.1
858,001 - SMc00925 0.34 +0.7
858,217 - SMc00925 0.65 +0.1
858,222 + SMc00925 0.66 +0.2
858,222 + SMc00925 0.66 +0.3
858,223 - SMc00925 0.66 -0.2
858,223 - SMc00925 0.66 +0.7
858,295 - SMc00925 0.77 +0.6
858,401 - +1.1
858,401 - -0.1
858,532 + -0.8
858,532 + +0.2
858,533 - +0.0
858,533 - +0.5
858,533 - +1.3
858,533 - +0.5
858,533 - -2.6
858,560 + +0.0
858,629 + +0.2
858,629 + -1.0
858,649 + -0.7
858,649 + -0.9
858,650 - +0.0
858,650 - -0.1
858,651 + +0.4
858,688 + +0.5
858,782 - SMc00924 0.18 +1.8
858,795 + SMc00924 0.20 -0.3
858,795 + SMc00924 0.20 +0.1
858,796 - SMc00924 0.20 -0.0
858,796 - SMc00924 0.20 -0.3
858,799 + SMc00924 0.20 -0.3
858,799 + SMc00924 0.20 +0.3
858,799 + SMc00924 0.20 +0.6
858,799 + SMc00924 0.20 -1.8
858,799 + SMc00924 0.20 +0.9
858,799 + SMc00924 0.20 -0.3
858,800 - SMc00924 0.21 -0.2
858,800 - SMc00924 0.21 +1.5
858,800 - SMc00924 0.21 -0.2
858,800 - SMc00924 0.21 +0.2
858,856 + SMc00924 0.28 -1.0
858,856 + SMc00924 0.28 -0.3
859,015 + SMc00924 0.50 +0.4
859,015 + SMc00924 0.50 -0.9
859,016 - SMc00924 0.50 -1.0
859,016 - SMc00924 0.50 +0.4
859,016 - SMc00924 0.50 +0.5
859,073 - SMc00924 0.57 -0.7
859,219 - SMc00924 0.77 -0.4
859,231 + SMc00924 0.79 +0.4
859,231 + SMc00924 0.79 +0.3
859,232 - SMc00924 0.79 +0.9
859,232 - SMc00924 0.79 -0.2
859,312 + SMc00924 0.90 -0.2
859,354 - +0.7
859,354 - -0.0
859,354 - +0.6
859,354 - +1.2
859,402 + +1.1
859,586 - +0.0
859,603 + +1.5
859,603 + -0.5
859,604 - -1.0
859,746 + SMc00923 0.11 -0.5
859,756 - SMc00923 0.13 +0.4
859,987 + SMc00923 0.49 -0.3
859,988 - SMc00923 0.49 -0.3
860,052 + SMc00923 0.59 -0.4
860,053 - SMc00923 0.60 +0.1
860,377 + +0.8

Or see this region's nucleotide sequence