Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00340 and SMc00341 are separated by 85 nucleotides SMc00341 and SMc00342 are separated by 207 nucleotides
SMc00340: SMc00340 - oxidoreductase, at 296,607 to 297,653
SMc00340
SMc00341: SMc00341 - hypothetical protein, at 297,739 to 298,068
SMc00341
SMc00342: SMc00342 - hypothetical protein, at 298,276 to 298,902
SMc00342
Position (kb) 297
298
299 Strain fitness (log2 ratio) -1
0
1
2 at 297.367 kb on + strand, within SMc00340 at 297.367 kb on + strand, within SMc00340 at 297.367 kb on + strand, within SMc00340 at 297.469 kb on + strand, within SMc00340 at 297.470 kb on - strand, within SMc00340 at 297.827 kb on + strand, within SMc00341 at 297.827 kb on + strand, within SMc00341 at 297.839 kb on + strand, within SMc00341 at 297.875 kb on + strand, within SMc00341 at 297.876 kb on - strand, within SMc00341 at 297.913 kb on - strand, within SMc00341 at 298.022 kb on - strand, within SMc00341 at 298.068 kb on + strand at 298.068 kb on + strand at 298.068 kb on + strand at 298.068 kb on + strand at 298.069 kb on - strand at 298.070 kb on + strand at 298.070 kb on + strand at 298.070 kb on + strand at 298.071 kb on - strand at 298.071 kb on - strand at 298.144 kb on + strand at 298.146 kb on + strand at 298.146 kb on + strand at 298.155 kb on + strand at 298.155 kb on + strand at 298.156 kb on - strand at 298.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 297,367 + SMc00340 0.73 +0.9 297,367 + SMc00340 0.73 -0.3 297,367 + SMc00340 0.73 -0.4 297,469 + SMc00340 0.82 -0.4 297,470 - SMc00340 0.82 -0.4 297,827 + SMc00341 0.27 +2.2 297,827 + SMc00341 0.27 +1.7 297,839 + SMc00341 0.30 +0.2 297,875 + SMc00341 0.41 +1.2 297,876 - SMc00341 0.42 +1.7 297,913 - SMc00341 0.53 -0.1 298,022 - SMc00341 0.86 +0.2 298,068 + -0.3 298,068 + -0.0 298,068 + -0.6 298,068 + +1.1 298,069 - +0.7 298,070 + -0.6 298,070 + -0.1 298,070 + +0.8 298,071 - +0.4 298,071 - +0.5 298,144 + +1.3 298,146 + +1.7 298,146 + +0.5 298,155 + -0.3 298,155 + -0.2 298,156 - +2.5 298,256 + +0.9
Or see this region's nucleotide sequence