Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21356 and SM_b21357 are separated by 97 nucleotides SM_b21357 and SM_b21358 are separated by 52 nucleotides SM_b21358 and SM_b21359 are separated by 141 nucleotides
SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169
_b21356
SM_b21357: SM_b21357 - hypothetical protein, at 1,023,267 to 1,023,785
_b21357
SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332
_b21358
SM_b21359: SM_b21359 - LysR family transcriptional regulator, at 1,024,474 to 1,024,932
_b21359
Position (kb)
1023
1024 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1022.335 kb on - strand, within SM_b21356 at 1022.346 kb on + strand, within SM_b21356 at 1022.346 kb on + strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.354 kb on + strand, within SM_b21356 at 1022.355 kb on - strand, within SM_b21356 at 1022.739 kb on + strand at 1022.748 kb on - strand, within SM_b21356 at 1022.902 kb on + strand, within SM_b21356 at 1022.942 kb on + strand, within SM_b21356 at 1022.943 kb on - strand, within SM_b21356 at 1022.966 kb on + strand, within SM_b21356 at 1022.966 kb on + strand, within SM_b21356 at 1022.967 kb on - strand, within SM_b21356 at 1022.967 kb on - strand, within SM_b21356 at 1022.979 kb on - strand, within SM_b21356 at 1023.220 kb on + strand at 1023.261 kb on + strand at 1023.262 kb on - strand at 1023.262 kb on - strand at 1023.376 kb on + strand, within SM_b21357 at 1023.376 kb on + strand, within SM_b21357 at 1023.376 kb on + strand, within SM_b21357 at 1023.376 kb on + strand, within SM_b21357 at 1023.377 kb on - strand, within SM_b21357 at 1023.377 kb on - strand, within SM_b21357 at 1023.428 kb on + strand, within SM_b21357 at 1023.429 kb on - strand, within SM_b21357 at 1023.429 kb on - strand, within SM_b21357 at 1023.637 kb on + strand, within SM_b21357 at 1023.637 kb on + strand, within SM_b21357 at 1023.638 kb on - strand, within SM_b21357 at 1023.700 kb on - strand, within SM_b21357 at 1023.783 kb on + strand at 1023.783 kb on + strand at 1023.783 kb on + strand at 1023.844 kb on + strand at 1023.859 kb on + strand at 1023.860 kb on - strand at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.046 kb on + strand, within SM_b21358 at 1024.047 kb on - strand, within SM_b21358 at 1024.047 kb on - strand at 1024.047 kb on - strand, within SM_b21358 at 1024.231 kb on - strand, within SM_b21358 at 1024.345 kb on - strand at 1024.453 kb on + strand at 1024.453 kb on + strand at 1024.461 kb on + strand at 1024.462 kb on - strand at 1024.467 kb on + strand at 1024.468 kb on - strand at 1024.468 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.496 kb on - strand at 1024.498 kb on + strand at 1024.498 kb on + strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.499 kb on - strand at 1024.528 kb on + strand, within SM_b21359 at 1024.529 kb on - strand, within SM_b21359 at 1024.619 kb on + strand, within SM_b21359 at 1024.620 kb on - strand, within SM_b21359 at 1024.667 kb on - strand, within SM_b21359
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,022,335 - SM_b21356 0.16 -1.0 1,022,346 + SM_b21356 0.17 -1.7 1,022,346 + SM_b21356 0.17 +1.7 1,022,347 - SM_b21356 0.17 -0.2 1,022,347 - SM_b21356 0.17 -0.4 1,022,347 - SM_b21356 0.17 +1.4 1,022,347 - SM_b21356 0.17 +0.5 1,022,354 + SM_b21356 0.18 +0.2 1,022,355 - SM_b21356 0.18 +1.7 1,022,739 + +1.5 1,022,748 - SM_b21356 0.58 +1.2 1,022,902 + SM_b21356 0.73 -0.6 1,022,942 + SM_b21356 0.77 +0.4 1,022,943 - SM_b21356 0.77 -0.5 1,022,966 + SM_b21356 0.79 -1.2 1,022,966 + SM_b21356 0.79 +0.9 1,022,967 - SM_b21356 0.80 -0.6 1,022,967 - SM_b21356 0.80 -0.3 1,022,979 - SM_b21356 0.81 -0.4 1,023,220 + -0.5 1,023,261 + -0.4 1,023,262 - +0.3 1,023,262 - -1.1 1,023,376 + SM_b21357 0.21 -0.2 1,023,376 + SM_b21357 0.21 +0.2 1,023,376 + SM_b21357 0.21 +1.1 1,023,376 + SM_b21357 0.21 -0.7 1,023,377 - SM_b21357 0.21 -0.6 1,023,377 - SM_b21357 0.21 -0.7 1,023,428 + SM_b21357 0.31 -1.2 1,023,429 - SM_b21357 0.31 -0.2 1,023,429 - SM_b21357 0.31 +0.1 1,023,637 + SM_b21357 0.71 -1.7 1,023,637 + SM_b21357 0.71 -4.4 1,023,638 - SM_b21357 0.71 -0.7 1,023,700 - SM_b21357 0.83 +1.1 1,023,783 + -0.5 1,023,783 + +2.2 1,023,783 + +0.5 1,023,844 + +0.0 1,023,859 + -0.1 1,023,860 - -0.3 1,024,046 + SM_b21358 0.42 -0.1 1,024,046 + SM_b21358 0.42 +0.2 1,024,046 + SM_b21358 0.42 -0.5 1,024,046 + SM_b21358 0.42 -1.1 1,024,046 + SM_b21358 0.42 +0.1 1,024,047 - SM_b21358 0.42 +1.1 1,024,047 - -0.8 1,024,047 - SM_b21358 0.42 -0.4 1,024,231 - SM_b21358 0.79 -0.5 1,024,345 - -0.8 1,024,453 + +0.8 1,024,453 + -0.1 1,024,461 + -0.6 1,024,462 - -0.5 1,024,467 + -2.0 1,024,468 - -1.1 1,024,468 - -0.7 1,024,496 - +1.0 1,024,496 - -0.2 1,024,496 - +0.3 1,024,498 + +0.6 1,024,498 + -1.0 1,024,499 - -1.1 1,024,499 - +0.5 1,024,499 - -0.1 1,024,528 + SM_b21359 0.12 +0.9 1,024,529 - SM_b21359 0.12 -3.1 1,024,619 + SM_b21359 0.32 +0.3 1,024,620 - SM_b21359 0.32 +1.5 1,024,667 - SM_b21359 0.42 +0.5
Or see this region's nucleotide sequence