Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20681

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20679 and SM_b20680 are separated by 5 nucleotidesSM_b20680 and SM_b20681 are separated by 54 nucleotidesSM_b20681 and SM_b20682 are separated by 169 nucleotides SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592 _b20679 SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413 _b20680 SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252 _b20681 SM_b20682: SM_b20682 - IclR family transcriptional regulator, at 1,484,422 to 1,485,243 _b20682 Position (kb) 1482 1483 1484 1485Strain fitness (log2 ratio) -2 -1 0 1at 1481.583 kb on + strandat 1481.583 kb on + strandat 1481.583 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.599 kb on + strandat 1481.600 kb on - strandat 1481.600 kb on - strandat 1481.600 kb on - strandat 1481.693 kb on - strand, within SM_b20680at 1481.753 kb on - strand, within SM_b20680at 1481.753 kb on - strand, within SM_b20680at 1481.805 kb on + strand, within SM_b20680at 1481.836 kb on + strand, within SM_b20680at 1481.837 kb on - strand, within SM_b20680at 1481.875 kb on + strand, within SM_b20680at 1481.885 kb on - strand, within SM_b20680at 1481.900 kb on + strand, within SM_b20680at 1482.076 kb on - strand, within SM_b20680at 1482.136 kb on + strand, within SM_b20680at 1482.137 kb on - strand, within SM_b20680at 1482.727 kb on + strand, within SM_b20681at 1482.829 kb on + strandat 1482.857 kb on - strand, within SM_b20681at 1482.857 kb on - strand, within SM_b20681at 1482.913 kb on + strand, within SM_b20681at 1482.914 kb on - strand, within SM_b20681at 1483.033 kb on + strand, within SM_b20681at 1483.088 kb on - strand, within SM_b20681at 1483.088 kb on - strand, within SM_b20681at 1483.126 kb on + strand, within SM_b20681at 1483.378 kb on + strand, within SM_b20681at 1483.378 kb on + strand, within SM_b20681at 1483.703 kb on - strand, within SM_b20681at 1483.721 kb on - strand, within SM_b20681at 1483.990 kb on + strand, within SM_b20681at 1484.034 kb on + strand, within SM_b20681at 1484.035 kb on - strand, within SM_b20681at 1484.072 kb on - strand, within SM_b20681at 1484.116 kb on - strandat 1484.116 kb on - strandat 1484.775 kb on + strand, within SM_b20682at 1484.784 kb on - strand, within SM_b20682at 1484.784 kb on - strand, within SM_b20682at 1484.964 kb on + strand, within SM_b20682at 1485.098 kb on - strand, within SM_b20682

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,481,583 + +0.4
1,481,583 + +0.8
1,481,583 + +0.1
1,481,599 + -0.1
1,481,599 + +0.2
1,481,599 + -0.5
1,481,599 + +0.6
1,481,600 - -0.2
1,481,600 - +0.9
1,481,600 - +0.9
1,481,693 - SM_b20680 0.12 +0.1
1,481,753 - SM_b20680 0.19 -0.9
1,481,753 - SM_b20680 0.19 -0.0
1,481,805 + SM_b20680 0.25 -1.5
1,481,836 + SM_b20680 0.29 +0.3
1,481,837 - SM_b20680 0.29 -0.4
1,481,875 + SM_b20680 0.34 -0.7
1,481,885 - SM_b20680 0.35 -1.0
1,481,900 + SM_b20680 0.37 +0.2
1,482,076 - SM_b20680 0.59 -0.3
1,482,136 + SM_b20680 0.66 +1.7
1,482,137 - SM_b20680 0.66 +0.4
1,482,727 + SM_b20681 0.15 -0.6
1,482,829 + +1.2
1,482,857 - SM_b20681 0.22 -0.3
1,482,857 - SM_b20681 0.22 -1.0
1,482,913 + SM_b20681 0.25 -1.3
1,482,914 - SM_b20681 0.25 -2.0
1,483,033 + SM_b20681 0.32 -0.6
1,483,088 - SM_b20681 0.35 -0.8
1,483,088 - SM_b20681 0.35 -0.2
1,483,126 + SM_b20681 0.37 +0.0
1,483,378 + SM_b20681 0.51 -0.8
1,483,378 + SM_b20681 0.51 +0.7
1,483,703 - SM_b20681 0.69 +0.7
1,483,721 - SM_b20681 0.70 -1.3
1,483,990 + SM_b20681 0.85 -0.4
1,484,034 + SM_b20681 0.88 -1.3
1,484,035 - SM_b20681 0.88 -0.5
1,484,072 - SM_b20681 0.90 +0.2
1,484,116 - -0.3
1,484,116 - +0.1
1,484,775 + SM_b20682 0.43 -0.5
1,484,784 - SM_b20682 0.44 -0.7
1,484,784 - SM_b20682 0.44 +0.5
1,484,964 + SM_b20682 0.66 -0.8
1,485,098 - SM_b20682 0.82 -1.5

Or see this region's nucleotide sequence