Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20678 and SM_b20679 are separated by 114 nucleotides SM_b20679 and SM_b20680 are separated by 5 nucleotides SM_b20680 and SM_b20681 are separated by 54 nucleotides
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413
_b20680
SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252
_b20681
Position (kb)
1480
1481
1482 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1480.118 kb on - strand, within SM_b20678 at 1480.354 kb on - strand, within SM_b20678 at 1480.501 kb on - strand at 1480.710 kb on - strand at 1481.081 kb on + strand, within SM_b20679 at 1481.245 kb on - strand, within SM_b20679 at 1481.246 kb on + strand, within SM_b20679 at 1481.247 kb on - strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.346 kb on - strand, within SM_b20679 at 1481.349 kb on - strand, within SM_b20679 at 1481.391 kb on + strand, within SM_b20679 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.693 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.805 kb on + strand, within SM_b20680 at 1481.836 kb on + strand, within SM_b20680 at 1481.837 kb on - strand, within SM_b20680 at 1481.875 kb on + strand, within SM_b20680 at 1481.885 kb on - strand, within SM_b20680 at 1481.900 kb on + strand, within SM_b20680 at 1482.076 kb on - strand, within SM_b20680 at 1482.136 kb on + strand, within SM_b20680 at 1482.137 kb on - strand, within SM_b20680
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,480,118 - SM_b20678 0.62 -0.3 1,480,354 - SM_b20678 0.81 +4.2 1,480,501 - -0.5 1,480,710 - +0.5 1,481,081 + SM_b20679 0.42 -0.1 1,481,245 - SM_b20679 0.61 +0.5 1,481,246 + SM_b20679 0.61 -0.8 1,481,247 - SM_b20679 0.61 +0.2 1,481,345 + SM_b20679 0.72 +0.1 1,481,345 + SM_b20679 0.72 +1.2 1,481,346 - SM_b20679 0.72 -1.5 1,481,349 - SM_b20679 0.72 +0.5 1,481,391 + SM_b20679 0.77 +1.1 1,481,583 + +0.4 1,481,583 + +0.8 1,481,583 + +0.1 1,481,599 + -0.1 1,481,599 + +0.2 1,481,599 + -0.5 1,481,599 + +0.6 1,481,600 - -0.2 1,481,600 - +0.9 1,481,600 - +0.9 1,481,693 - SM_b20680 0.12 +0.1 1,481,753 - SM_b20680 0.19 -0.9 1,481,753 - SM_b20680 0.19 -0.0 1,481,805 + SM_b20680 0.25 -1.5 1,481,836 + SM_b20680 0.29 +0.3 1,481,837 - SM_b20680 0.29 -0.4 1,481,875 + SM_b20680 0.34 -0.7 1,481,885 - SM_b20680 0.35 -1.0 1,481,900 + SM_b20680 0.37 +0.2 1,482,076 - SM_b20680 0.59 -0.3 1,482,136 + SM_b20680 0.66 +1.7 1,482,137 - SM_b20680 0.66 +0.4
Or see this region's nucleotide sequence