Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20650

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20649 and SM_b20650 overlap by 4 nucleotidesSM_b20650 and SM_b20651 are separated by 27 nucleotidesSM_b20651 and SM_b20652 are separated by 26 nucleotides SM_b20649: SM_b20649 - NAD synthetase, at 1,450,582 to 1,451,586 _b20649 SM_b20650: SM_b20650 - long-chain fatty acid CoA ligase, at 1,451,583 to 1,453,130 _b20650 SM_b20651: SM_b20651 - hypothetical protein, at 1,453,158 to 1,453,424 _b20651 SM_b20652: SM_b20652 - asparagine synthetase, at 1,453,451 to 1,455,388 _b20652 Position (kb) 1451 1452 1453 1454Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1450.583 kb on + strandat 1450.770 kb on - strand, within SM_b20649at 1450.785 kb on - strand, within SM_b20649at 1450.785 kb on - strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.814 kb on + strand, within SM_b20649at 1450.815 kb on - strand, within SM_b20649at 1450.815 kb on - strand, within SM_b20649at 1450.880 kb on + strand, within SM_b20649at 1450.881 kb on - strand, within SM_b20649at 1450.881 kb on - strand, within SM_b20649at 1450.895 kb on + strand, within SM_b20649at 1450.896 kb on - strand, within SM_b20649at 1450.896 kb on - strand, within SM_b20649at 1450.962 kb on - strand, within SM_b20649at 1451.015 kb on + strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.016 kb on - strand, within SM_b20649at 1451.019 kb on - strand, within SM_b20649at 1451.049 kb on + strand, within SM_b20649at 1451.076 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.148 kb on - strand, within SM_b20649at 1451.205 kb on - strand, within SM_b20649at 1451.246 kb on + strand, within SM_b20649at 1451.453 kb on - strand, within SM_b20649at 1451.912 kb on - strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.175 kb on + strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.176 kb on - strand, within SM_b20650at 1452.205 kb on + strand, within SM_b20650at 1452.205 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.214 kb on + strand, within SM_b20650at 1452.215 kb on - strandat 1452.292 kb on + strand, within SM_b20650at 1452.293 kb on - strand, within SM_b20650at 1452.378 kb on - strand, within SM_b20650at 1452.478 kb on + strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.479 kb on - strand, within SM_b20650at 1452.544 kb on + strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.545 kb on - strand, within SM_b20650at 1452.576 kb on - strand, within SM_b20650at 1452.626 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.628 kb on + strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.629 kb on - strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.856 kb on + strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1452.857 kb on - strand, within SM_b20650at 1453.160 kb on - strandat 1453.160 kb on - strandat 1453.355 kb on - strand, within SM_b20651at 1453.355 kb on - strand, within SM_b20651at 1453.409 kb on + strandat 1453.425 kb on + strandat 1453.654 kb on - strand, within SM_b20652at 1453.903 kb on + strand, within SM_b20652at 1453.903 kb on + strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.904 kb on - strand, within SM_b20652at 1453.905 kb on + strand, within SM_b20652at 1453.905 kb on + strand, within SM_b20652at 1453.935 kb on + strand, within SM_b20652at 1454.011 kb on - strand, within SM_b20652

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,450,583 + -0.5
1,450,770 - SM_b20649 0.19 -0.2
1,450,785 - SM_b20649 0.20 -2.3
1,450,785 - SM_b20649 0.20 -0.0
1,450,814 + SM_b20649 0.23 +0.3
1,450,814 + SM_b20649 0.23 +0.6
1,450,814 + SM_b20649 0.23 +0.1
1,450,814 + SM_b20649 0.23 +0.0
1,450,814 + SM_b20649 0.23 +0.9
1,450,815 - SM_b20649 0.23 -0.8
1,450,815 - SM_b20649 0.23 -1.6
1,450,880 + SM_b20649 0.30 -0.0
1,450,881 - SM_b20649 0.30 +0.3
1,450,881 - SM_b20649 0.30 +0.2
1,450,895 + SM_b20649 0.31 -0.5
1,450,896 - SM_b20649 0.31 +0.9
1,450,896 - SM_b20649 0.31 +1.1
1,450,962 - SM_b20649 0.38 -0.2
1,451,015 + SM_b20649 0.43 -1.4
1,451,016 - SM_b20649 0.43 +1.6
1,451,016 - SM_b20649 0.43 -0.9
1,451,016 - SM_b20649 0.43 +0.4
1,451,019 - SM_b20649 0.43 -0.7
1,451,049 + SM_b20649 0.46 +1.0
1,451,076 - SM_b20649 0.49 -0.6
1,451,148 - SM_b20649 0.56 +0.2
1,451,148 - SM_b20649 0.56 -0.6
1,451,148 - SM_b20649 0.56 +0.1
1,451,205 - SM_b20649 0.62 +0.8
1,451,246 + SM_b20649 0.66 -0.7
1,451,453 - SM_b20649 0.87 +0.3
1,451,912 - SM_b20650 0.21 +0.2
1,452,175 + SM_b20650 0.38 -0.4
1,452,175 + SM_b20650 0.38 +1.0
1,452,175 + SM_b20650 0.38 -0.9
1,452,175 + SM_b20650 0.38 -1.9
1,452,176 - SM_b20650 0.38 +1.0
1,452,176 - SM_b20650 0.38 +0.3
1,452,176 - SM_b20650 0.38 -0.5
1,452,176 - SM_b20650 0.38 +0.8
1,452,176 - SM_b20650 0.38 -0.7
1,452,205 + SM_b20650 0.40 +0.1
1,452,205 + SM_b20650 0.40 -0.3
1,452,214 + SM_b20650 0.41 -0.6
1,452,214 + SM_b20650 0.41 +0.4
1,452,214 + SM_b20650 0.41 -0.2
1,452,215 - +0.0
1,452,292 + SM_b20650 0.46 -0.6
1,452,293 - SM_b20650 0.46 -0.0
1,452,378 - SM_b20650 0.51 +0.2
1,452,478 + SM_b20650 0.58 -3.8
1,452,479 - SM_b20650 0.58 -0.1
1,452,479 - SM_b20650 0.58 -0.3
1,452,544 + SM_b20650 0.62 -0.1
1,452,545 - SM_b20650 0.62 +0.5
1,452,545 - SM_b20650 0.62 +1.6
1,452,545 - SM_b20650 0.62 -1.6
1,452,576 - SM_b20650 0.64 -0.6
1,452,626 + SM_b20650 0.67 +0.5
1,452,628 + SM_b20650 0.68 -1.1
1,452,628 + SM_b20650 0.68 -0.9
1,452,628 + SM_b20650 0.68 +0.0
1,452,628 + SM_b20650 0.68 -0.4
1,452,629 - SM_b20650 0.68 -0.1
1,452,629 - SM_b20650 0.68 -1.0
1,452,629 - SM_b20650 0.68 +2.6
1,452,629 - SM_b20650 0.68 -0.3
1,452,856 + SM_b20650 0.82 -0.7
1,452,856 + SM_b20650 0.82 +0.1
1,452,856 + SM_b20650 0.82 +0.2
1,452,857 - SM_b20650 0.82 -0.1
1,452,857 - SM_b20650 0.82 +0.4
1,452,857 - SM_b20650 0.82 -0.7
1,452,857 - SM_b20650 0.82 -0.6
1,453,160 - -0.2
1,453,160 - +0.0
1,453,355 - SM_b20651 0.74 -1.4
1,453,355 - SM_b20651 0.74 +0.3
1,453,409 + +0.0
1,453,425 + +0.4
1,453,654 - SM_b20652 0.10 +0.5
1,453,903 + SM_b20652 0.23 -1.0
1,453,903 + SM_b20652 0.23 -0.4
1,453,904 - SM_b20652 0.23 -0.2
1,453,904 - SM_b20652 0.23 -0.4
1,453,904 - SM_b20652 0.23 -0.2
1,453,904 - SM_b20652 0.23 -0.9
1,453,905 + SM_b20652 0.23 +0.1
1,453,905 + SM_b20652 0.23 +1.2
1,453,935 + SM_b20652 0.25 +1.4
1,454,011 - SM_b20652 0.29 -0.2

Or see this region's nucleotide sequence