Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20484 and SM_b20485 are separated by 105 nucleotides SM_b20485 and SM_b20486 overlap by 8 nucleotides SM_b20486 and SM_b20487 overlap by 4 nucleotides
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
SM_b20486: SM_b20486 - sugar ABC transporter permease, at 502,455 to 503,456
_b20486
SM_b20487: SM_b20487 - sugar ABC transporter permease, at 503,453 to 504,451
_b20487
Position (kb) 500
501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2 at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484 at 500.755 kb on + strand at 501.137 kb on + strand, within SM_b20485 at 501.138 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.191 kb on - strand, within SM_b20485 at 501.324 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.648 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 502.355 kb on + strand at 502.355 kb on + strand at 502.409 kb on + strand at 502.409 kb on + strand at 502.410 kb on - strand at 502.454 kb on + strand at 502.454 kb on + strand at 502.455 kb on - strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.515 kb on - strand at 502.650 kb on - strand, within SM_b20486 at 502.684 kb on - strand, within SM_b20486 at 502.842 kb on - strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.846 kb on - strand at 502.887 kb on + strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.094 kb on - strand, within SM_b20486 at 503.169 kb on + strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 499,950 + SM_b20484 0.12 -0.3 500,106 + SM_b20484 0.27 +0.7 500,291 + SM_b20484 0.46 -0.7 500,292 - SM_b20484 0.46 +1.4 500,357 + SM_b20484 0.53 +0.7 500,358 - SM_b20484 0.53 +0.3 500,755 + -0.6 501,137 + SM_b20485 0.13 +0.3 501,138 - SM_b20485 0.13 -0.2 501,183 - SM_b20485 0.16 -0.3 501,183 - SM_b20485 0.16 -1.5 501,190 + SM_b20485 0.17 +0.4 501,190 + SM_b20485 0.17 -0.6 501,191 - SM_b20485 0.17 -0.3 501,324 - SM_b20485 0.26 -0.1 501,405 - SM_b20485 0.31 -0.2 501,405 - SM_b20485 0.31 -0.9 501,648 - SM_b20485 0.47 +0.7 501,794 - SM_b20485 0.56 +1.2 501,794 - SM_b20485 0.56 -0.1 502,355 + +0.8 502,355 + -0.1 502,409 + +0.2 502,409 + +0.0 502,410 - +0.4 502,454 + +0.1 502,454 + +0.9 502,455 - +0.4 502,460 + -0.2 502,460 + +1.9 502,460 + +0.0 502,515 - -0.4 502,650 - SM_b20486 0.19 -0.3 502,684 - SM_b20486 0.23 +0.1 502,842 - SM_b20486 0.39 -0.1 502,845 + SM_b20486 0.39 -0.3 502,845 + SM_b20486 0.39 +0.5 502,846 - +0.8 502,887 + SM_b20486 0.43 -0.8 502,950 - SM_b20486 0.49 +0.3 502,950 - SM_b20486 0.49 +0.1 502,950 - SM_b20486 0.49 -0.1 503,046 + SM_b20486 0.59 +0.5 503,046 + SM_b20486 0.59 -0.4 503,046 + SM_b20486 0.59 -0.8 503,046 + SM_b20486 0.59 -0.4 503,094 - SM_b20486 0.64 -0.3 503,169 + SM_b20486 0.71 -0.6 503,170 - SM_b20486 0.71 -0.7 503,170 - SM_b20486 0.71 -1.8
Or see this region's nucleotide sequence