Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20321

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20320 and SM_b20321 are separated by 28 nucleotidesSM_b20321 and SM_b20322 overlap by 1 nucleotidesSM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935 _b20320 SM_b20321: SM_b20321 - hypothetical protein, at 323,964 to 325,229 _b20321 SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834 _b20322 SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581 _b20323 Position (kb) 323 324 325 326Strain fitness (log2 ratio) -1 0 1 2at 323.008 kb on - strandat 323.008 kb on - strandat 323.379 kb on + strand, within SM_b20320at 323.405 kb on - strand, within SM_b20320at 324.184 kb on + strand, within SM_b20321at 324.355 kb on + strand, within SM_b20321at 324.415 kb on + strand, within SM_b20321at 324.416 kb on - strand, within SM_b20321at 324.603 kb on - strand, within SM_b20321at 324.603 kb on - strand, within SM_b20321at 324.643 kb on + strand, within SM_b20321at 324.649 kb on + strand, within SM_b20321at 324.649 kb on + strand, within SM_b20321at 324.650 kb on - strand, within SM_b20321at 324.688 kb on - strand, within SM_b20321at 324.728 kb on + strand, within SM_b20321at 324.728 kb on + strand, within SM_b20321at 324.729 kb on - strand, within SM_b20321at 324.753 kb on + strand, within SM_b20321at 324.761 kb on - strand, within SM_b20321at 324.844 kb on + strand, within SM_b20321at 324.844 kb on + strand, within SM_b20321at 324.915 kb on + strand, within SM_b20321at 324.952 kb on + strand, within SM_b20321at 324.952 kb on + strand, within SM_b20321at 324.952 kb on + strandat 324.952 kb on + strand, within SM_b20321at 324.953 kb on - strand, within SM_b20321at 325.075 kb on + strand, within SM_b20321at 325.147 kb on + strandat 325.147 kb on + strandat 325.148 kb on - strandat 325.397 kb on - strand, within SM_b20322at 325.398 kb on + strand, within SM_b20322at 325.566 kb on + strand, within SM_b20322at 325.651 kb on - strand, within SM_b20322at 325.652 kb on + strand, within SM_b20322at 325.652 kb on + strand, within SM_b20322at 325.652 kb on + strand, within SM_b20322at 325.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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323,008 - -1.5
323,008 - +0.9
323,379 + SM_b20320 0.44 -0.4
323,405 - SM_b20320 0.47 -0.8
324,184 + SM_b20321 0.17 +0.2
324,355 + SM_b20321 0.31 -0.0
324,415 + SM_b20321 0.36 +0.7
324,416 - SM_b20321 0.36 +0.3
324,603 - SM_b20321 0.50 +0.7
324,603 - SM_b20321 0.50 -1.3
324,643 + SM_b20321 0.54 +0.8
324,649 + SM_b20321 0.54 -1.6
324,649 + SM_b20321 0.54 +2.0
324,650 - SM_b20321 0.54 +0.0
324,688 - SM_b20321 0.57 +0.6
324,728 + SM_b20321 0.60 +0.5
324,728 + SM_b20321 0.60 +0.9
324,729 - SM_b20321 0.60 -0.1
324,753 + SM_b20321 0.62 +0.2
324,761 - SM_b20321 0.63 -1.0
324,844 + SM_b20321 0.70 +0.1
324,844 + SM_b20321 0.70 +0.7
324,915 + SM_b20321 0.75 -1.1
324,952 + SM_b20321 0.78 +0.0
324,952 + SM_b20321 0.78 +0.2
324,952 + +1.6
324,952 + SM_b20321 0.78 +1.8
324,953 - SM_b20321 0.78 +0.8
325,075 + SM_b20321 0.88 +0.5
325,147 + +0.5
325,147 + -0.6
325,148 - +0.2
325,397 - SM_b20322 0.28 -0.1
325,398 + SM_b20322 0.28 -0.1
325,566 + SM_b20322 0.56 -0.3
325,651 - SM_b20322 0.70 +0.2
325,652 + SM_b20322 0.70 -0.1
325,652 + SM_b20322 0.70 -0.0
325,652 + SM_b20322 0.70 -0.7
325,911 - -0.3

Or see this region's nucleotide sequence