Experiment: KB with Chrysophanol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3583 and Psyr_3584 are separated by 15 nucleotides Psyr_3584 and Psyr_3585 overlap by 1 nucleotides Psyr_3585 and Psyr_3586 overlap by 26 nucleotides Psyr_3586 and Psyr_3587 are separated by 26 nucleotides
Psyr_3583: Psyr_3583 - condensin subunit ScpB, at 4,266,535 to 4,267,302
_3583
Psyr_3584: Psyr_3584 - condensin subunit ScpA, at 4,267,318 to 4,268,136
_3584
Psyr_3585: Psyr_3585 - Sua5/YciO/YrdC/YwlC, at 4,268,136 to 4,268,804
_3585
Psyr_3586: Psyr_3586 - Phosphoesterase PHP, N-terminal:PHP, C-terminal, at 4,268,779 to 4,269,642
_3586
Psyr_3587: Psyr_3587 - Intracellular septation protein A, at 4,269,669 to 4,270,304
_3587
Position (kb) 4268
4269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.215 kb on - strand, within Psyr_3583 at 4267.215 kb on - strand, within Psyr_3583 at 4267.313 kb on + strand at 4267.313 kb on + strand at 4267.314 kb on - strand at 4267.319 kb on + strand at 4267.319 kb on + strand at 4267.320 kb on - strand at 4267.731 kb on - strand, within Psyr_3584 at 4267.731 kb on - strand, within Psyr_3584 at 4267.895 kb on + strand, within Psyr_3584 at 4267.895 kb on + strand, within Psyr_3584 at 4267.896 kb on - strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.070 kb on - strand at 4268.231 kb on + strand, within Psyr_3585 at 4268.231 kb on + strand, within Psyr_3585 at 4268.294 kb on - strand, within Psyr_3585 at 4268.477 kb on - strand, within Psyr_3585 at 4268.477 kb on - strand, within Psyr_3585 at 4268.477 kb on - strand, within Psyr_3585 at 4268.653 kb on + strand, within Psyr_3585 at 4268.672 kb on - strand, within Psyr_3585 at 4268.769 kb on + strand at 4268.769 kb on + strand at 4268.794 kb on - strand at 4268.852 kb on + strand at 4268.853 kb on - strand at 4268.853 kb on - strand at 4268.984 kb on - strand, within Psyr_3586 at 4268.984 kb on - strand, within Psyr_3586 at 4268.984 kb on - strand, within Psyr_3586 at 4269.033 kb on + strand, within Psyr_3586 at 4269.050 kb on + strand, within Psyr_3586 at 4269.051 kb on - strand, within Psyr_3586 at 4269.303 kb on + strand, within Psyr_3586 at 4269.420 kb on + strand, within Psyr_3586 at 4269.420 kb on + strand, within Psyr_3586 at 4269.421 kb on - strand, within Psyr_3586 at 4269.634 kb on + strand at 4269.634 kb on + strand at 4269.635 kb on - strand at 4269.673 kb on + strand at 4269.673 kb on + strand at 4269.674 kb on - strand at 4269.674 kb on - strand at 4269.677 kb on - strand at 4269.795 kb on - strand, within Psyr_3587 at 4269.795 kb on - strand, within Psyr_3587 at 4269.798 kb on + strand, within Psyr_3587 at 4269.798 kb on + strand, within Psyr_3587 at 4269.799 kb on - strand, within Psyr_3587
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM remove 4,267,214 + Psyr_3583 0.88 -0.1 4,267,214 + Psyr_3583 0.88 +0.7 4,267,214 + Psyr_3583 0.88 -0.0 4,267,214 + Psyr_3583 0.88 +0.3 4,267,214 + Psyr_3583 0.88 +1.0 4,267,215 - Psyr_3583 0.89 +1.3 4,267,215 - Psyr_3583 0.89 +2.6 4,267,313 + +0.8 4,267,313 + +0.8 4,267,314 - -0.0 4,267,319 + -0.3 4,267,319 + +0.2 4,267,320 - -0.0 4,267,731 - Psyr_3584 0.50 -0.6 4,267,731 - Psyr_3584 0.50 -0.8 4,267,895 + Psyr_3584 0.70 -0.0 4,267,895 + Psyr_3584 0.70 -0.5 4,267,896 - Psyr_3584 0.71 -0.8 4,267,904 + Psyr_3584 0.72 +4.3 4,267,904 + Psyr_3584 0.72 +0.6 4,267,904 + Psyr_3584 0.72 +0.2 4,267,904 + Psyr_3584 0.72 +0.2 4,267,904 + Psyr_3584 0.72 -1.4 4,267,904 + Psyr_3584 0.72 -1.5 4,267,904 + Psyr_3584 0.72 -1.3 4,267,904 + Psyr_3584 0.72 -0.3 4,267,905 - Psyr_3584 0.72 -2.8 4,267,905 - Psyr_3584 0.72 -0.4 4,267,905 - Psyr_3584 0.72 -0.3 4,267,905 - Psyr_3584 0.72 +1.3 4,267,905 - Psyr_3584 0.72 -0.6 4,268,033 + Psyr_3584 0.87 -2.1 4,268,033 + Psyr_3584 0.87 -0.4 4,268,033 + Psyr_3584 0.87 -0.2 4,268,033 + Psyr_3584 0.87 +0.2 4,268,033 + Psyr_3584 0.87 +0.4 4,268,033 + Psyr_3584 0.87 +1.8 4,268,033 + Psyr_3584 0.87 +4.0 4,268,034 - Psyr_3584 0.87 -1.0 4,268,034 - Psyr_3584 0.87 -0.3 4,268,034 - Psyr_3584 0.87 -0.0 4,268,034 - Psyr_3584 0.87 +0.2 4,268,034 - Psyr_3584 0.87 +0.1 4,268,070 - +3.8 4,268,231 + Psyr_3585 0.14 -0.5 4,268,231 + Psyr_3585 0.14 -0.3 4,268,294 - Psyr_3585 0.24 -0.2 4,268,477 - Psyr_3585 0.51 -1.2 4,268,477 - Psyr_3585 0.51 +1.3 4,268,477 - Psyr_3585 0.51 -1.2 4,268,653 + Psyr_3585 0.77 -0.5 4,268,672 - Psyr_3585 0.80 -2.2 4,268,769 + -0.6 4,268,769 + +0.2 4,268,794 - -0.7 4,268,852 + +1.0 4,268,853 - -0.0 4,268,853 - -1.1 4,268,984 - Psyr_3586 0.24 +2.0 4,268,984 - Psyr_3586 0.24 +0.7 4,268,984 - Psyr_3586 0.24 +0.9 4,269,033 + Psyr_3586 0.29 -1.7 4,269,050 + Psyr_3586 0.31 -0.0 4,269,051 - Psyr_3586 0.31 +0.3 4,269,303 + Psyr_3586 0.61 +0.9 4,269,420 + Psyr_3586 0.74 +0.1 4,269,420 + Psyr_3586 0.74 -0.3 4,269,421 - Psyr_3586 0.74 -1.4 4,269,634 + +0.3 4,269,634 + +0.8 4,269,635 - -1.5 4,269,673 + +2.2 4,269,673 + +2.0 4,269,674 - -0.9 4,269,674 - -0.1 4,269,677 - -3.5 4,269,795 - Psyr_3587 0.20 -3.3 4,269,795 - Psyr_3587 0.20 -1.6 4,269,798 + Psyr_3587 0.20 -3.4 4,269,798 + Psyr_3587 0.20 -2.0 4,269,799 - Psyr_3587 0.20 -3.7
Or see this region's nucleotide sequence