Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1805

Experiment: KB with Chrysophanol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Chrysophanol 10 mM
2,077,608	+		Psyr_1804	0.19	-1.1
2,077,608	+		Psyr_1804	0.19	+0.1
2,077,608	+		Psyr_1804	0.19	+1.3
2,077,608	+		Psyr_1804	0.19	-0.5
2,077,608	+		Psyr_1804	0.19	+0.2
2,077,609	-		Psyr_1804	0.19	-0.7
2,077,609	-		Psyr_1804	0.19	+0.4
2,077,609	-		Psyr_1804	0.19	-0.7
2,077,609	-		Psyr_1804	0.19	+0.1
2,077,609	-		Psyr_1804	0.19	-0.5
2,077,609	-		Psyr_1804	0.19	+1.9
2,077,609	-		Psyr_1804	0.19	-1.0
2,077,609	-		Psyr_1804	0.19	+1.4
2,077,609	-		Psyr_1804	0.19	-1.0
2,077,644	+		Psyr_1804	0.24	+0.1
2,077,644	+		Psyr_1804	0.24	-1.2
2,077,644	+		Psyr_1804	0.24	-0.5
2,077,645	-		Psyr_1804	0.24	+0.5
2,077,731	+		Psyr_1804	0.35	-0.1
2,077,732	-		Psyr_1804	0.35	-0.7
2,077,797	+		Psyr_1804	0.43	-1.0
2,077,890	+		Psyr_1804	0.55	-0.1
2,077,890	+		Psyr_1804	0.55	+1.1
2,077,890	+		Psyr_1804	0.55	-0.4
2,077,891	-		Psyr_1804	0.55	+0.7
2,077,986	+		Psyr_1804	0.67	-0.2
2,077,986	+		Psyr_1804	0.67	+1.2
2,077,987	-		Psyr_1804	0.67	+0.8
2,077,987	-		Psyr_1804	0.67	-1.5
2,077,987	-		Psyr_1804	0.67	+0.1
2,078,026	-		Psyr_1804	0.72	-0.6
2,078,089	+		Psyr_1804	0.80	+1.0
2,078,090	-		Psyr_1804	0.81	-0.6
2,078,140	-		Psyr_1804	0.87	-0.5
2,078,149	+		Psyr_1804	0.88	-0.3
2,078,152	+		Psyr_1804	0.88	+0.2
2,078,152	+		Psyr_1804	0.88	-0.3
2,078,153	-		Psyr_1804	0.89	+0.1
2,078,153	-		Psyr_1804	0.89	-0.7
2,078,153	-		Psyr_1804	0.89	+0.1
2,078,217	-				-1.2
2,078,233	+				+1.0
2,078,261	+				+1.0
2,078,261	+				-0.6
2,078,262	-				-0.6
2,078,262	-				+1.1
2,078,262	-				+0.2
2,078,262	-				-1.0
2,078,262	-				-0.9
2,078,290	+				+0.4
2,078,290	+				-0.7
2,078,290	+				-1.4
2,078,290	+				+0.4
2,078,290	+				+3.4
2,078,291	-				-1.0
2,078,291	-				+2.1
2,078,291	-				-1.3
2,078,291	-				+1.1
2,078,291	-				-0.4
2,078,291	-				-0.4
2,078,320	-				+0.9
2,078,388	+				-0.8
2,078,644	+				+1.1
2,078,680	-				-0.5
2,078,869	-		Psyr_1805	0.20	+0.5
2,079,026	+		Psyr_1805	0.32	-0.4
2,079,026	+		Psyr_1805	0.32	+0.7
2,079,026	+		Psyr_1805	0.32	+0.2
2,079,026	+		Psyr_1805	0.32	-1.0
2,079,026	+		Psyr_1805	0.32	+1.1
2,079,027	-		Psyr_1805	0.32	+2.7
2,079,027	-		Psyr_1805	0.32	+1.1
2,079,027	-		Psyr_1805	0.32	-0.5
2,079,027	-		Psyr_1805	0.32	+1.1
2,079,096	+		Psyr_1805	0.38	+0.1
2,079,104	+		Psyr_1805	0.38	-0.8
2,079,105	-		Psyr_1805	0.38	-1.5
2,079,105	-		Psyr_1805	0.38	+0.7
2,079,158	+		Psyr_1805	0.43	+1.1
2,079,159	-		Psyr_1805	0.43	-0.6
2,079,159	-		Psyr_1805	0.43	-0.8
2,079,171	-		Psyr_1805	0.44	-0.2
2,079,224	+		Psyr_1805	0.48	-0.3
2,079,224	+		Psyr_1805	0.48	+1.6
2,079,224	+		Psyr_1805	0.48	+1.4
2,079,224	+		Psyr_1805	0.48	+0.6
2,079,224	+		Psyr_1805	0.48	-0.4
2,079,225	-		Psyr_1805	0.48	+0.2
2,079,225	-		Psyr_1805	0.48	+1.5
2,079,225	-		Psyr_1805	0.48	+0.1
2,079,225	-		Psyr_1805	0.48	-0.5
2,079,384	-		Psyr_1805	0.60	-0.6
2,079,404	-		Psyr_1805	0.62	+2.7
2,079,404	-		Psyr_1805	0.62	+1.3
2,079,504	-		Psyr_1805	0.69	+1.1
2,079,588	-		Psyr_1805	0.76	+0.9
2,079,651	-		Psyr_1805	0.81	-0.3
2,079,651	-		Psyr_1805	0.81	-1.1
2,079,707	+		Psyr_1805	0.85	-0.7
2,079,707	+		Psyr_1805	0.85	-0.5
2,079,707	+		Psyr_1805	0.85	+0.8
2,079,708	-		Psyr_1805	0.85	+0.3
2,079,708	-		Psyr_1805	0.85	+0.3
2,079,708	-		Psyr_1805	0.85	+0.6
2,079,722	+		Psyr_1805	0.86	+0.5
2,079,722	+		Psyr_1805	0.86	+1.4
2,079,723	-		Psyr_1805	0.86	+0.1
2,079,723	-		Psyr_1805	0.86	-0.9
2,079,723	-		Psyr_1805	0.86	+0.6
2,079,723	-		Psyr_1805	0.86	+2.9
2,079,812	+				-0.2
2,079,812	+				+1.1
2,079,813	-				+3.4
2,079,813	-				+3.1
2,079,813	-				+1.6
2,079,888	+				+1.1
2,079,888	+				+1.1
2,079,888	+				-1.2
2,079,888	+				-0.1
2,079,888	+				+1.0
2,079,888	+				+0.8
2,079,888	+				-0.2
2,079,888	+				-0.6
2,079,888	+				-1.7
2,079,888	+				-1.3
2,079,889	-				-1.6
2,079,889	-				+0.0
2,079,889	-				-1.4
2,079,889	-				+0.4
2,079,889	-				-0.3
2,079,889	-				-0.8
2,079,889	-				+1.0
2,079,889	-				-1.3
2,079,889	-				+1.1
2,079,889	-				+0.1
2,079,889	-				+0.1
2,079,889	-				-0.8
2,079,889	-				-0.9
2,079,889	-				-0.9
2,079,958	+		Psyr_1806	0.10	+0.6
2,079,958	+		Psyr_1806	0.10	+0.7
2,079,958	+		Psyr_1806	0.10	+0.8
2,079,958	+		Psyr_1806	0.10	-1.7
2,079,959	-		Psyr_1806	0.10	-0.2
2,080,459	+				+0.5
2,080,462	-				+0.1
2,080,462	-				+1.5
2,080,520	+				+0.9
2,080,521	-				+1.1
2,080,552	+				+0.1
2,080,553	-				+0.8
2,080,573	+				-1.1
2,080,573	+				-1.3
2,080,573	+				+2.0
2,080,573	+				+0.7
2,080,573	+				+1.1
2,080,573	+				+0.1
2,080,573	+				-2.2
2,080,573	+				+1.2
2,080,574	-				+0.2
2,080,574	-				-1.7
2,080,574	-				+1.3
2,080,574	-				-1.2
2,080,574	-				+0.4
2,080,574	-				+1.1
2,080,574	-				+1.0
2,080,574	-				-0.6
2,080,574	-				-0.3
2,080,574	-				-1.9
2,080,574	-				-0.8
2,080,574	-				+0.5
2,080,574	-				+1.1
2,080,577	+				+2.1
2,080,577	+				+0.3
2,080,577	+				-0.4
2,080,577	+				+1.6
2,080,577	+				-0.6
2,080,577	+				-0.2
2,080,577	+				+0.1
2,080,577	+				+0.7
2,080,577	+				-1.4
2,080,577	+				-1.5
2,080,577	+				+0.3
2,080,577	+				+0.6
2,080,577	+				+1.1
2,080,577	+				-2.2
2,080,577	+				-0.5
2,080,577	+				-1.5
2,080,577	+				-0.5
2,080,577	+				+0.1
2,080,578	-				-1.5
2,080,578	-				-0.5
2,080,578	-				-0.6
2,080,578	-				-0.3
2,080,578	-				+0.4
2,080,578	-				-0.1
2,080,578	-				-0.5
2,080,578	-				+0.7
2,080,578	-				-0.4
2,080,578	-				+1.1
2,080,578	-				-0.8
2,080,578	-				+0.9
2,080,578	-				-0.7
2,080,578	-				+0.1
2,080,578	-				+0.3
2,080,578	-				-0.7
2,080,578	-				+1.1
2,080,578	-				-0.4
2,080,578	-				+0.3
2,080,578	-				+0.1
2,080,578	-				+1.2
2,080,579	+				+0.3
2,080,579	+				+0.9
2,080,579	+				+0.1
2,080,580	-				-0.6
2,080,580	-				-0.5
2,080,580	-				+0.3
2,080,580	-				+0.6
2,080,580	-				+2.0
2,080,580	-				+0.0
2,080,598	-				-0.1
2,080,611	+				+1.5
2,080,675	-				+3.4
2,080,859	+		Psyr_1807	0.24	-2.8
2,080,860	-		Psyr_1807	0.24	+1.1
2,080,860	-		Psyr_1807	0.24	+1.4
2,080,860	-		Psyr_1807	0.24	-0.1
2,080,860	-		Psyr_1807	0.24	-0.1
2,080,860	-		Psyr_1807	0.24	+1.4