Experiment: KB with Chrysophanol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1093 and Psyr_1094 are separated by 128 nucleotides Psyr_1094 and Psyr_1095 are separated by 411 nucleotides
Psyr_1093: Psyr_1093 - permease YjgP/YjgQ, at 1,235,580 to 1,236,641
_1093
Psyr_1094: Psyr_1094 - cold-shock DNA-binding protein family, at 1,236,770 to 1,236,982
_1094
Psyr_1095: Psyr_1095 - Glycine cleavage system T protein, at 1,237,394 to 1,238,518
_1095
Position (kb) 1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1236.640 kb on - strand at 1236.750 kb on - strand at 1236.890 kb on + strand, within Psyr_1094 at 1236.890 kb on + strand, within Psyr_1094 at 1236.890 kb on + strand, within Psyr_1094 at 1236.891 kb on - strand, within Psyr_1094 at 1236.891 kb on - strand, within Psyr_1094 at 1236.922 kb on + strand, within Psyr_1094 at 1236.923 kb on - strand, within Psyr_1094 at 1236.923 kb on - strand, within Psyr_1094 at 1237.063 kb on + strand at 1237.072 kb on + strand at 1237.072 kb on + strand at 1237.072 kb on + strand at 1237.073 kb on - strand at 1237.084 kb on + strand at 1237.084 kb on + strand at 1237.085 kb on - strand at 1237.085 kb on - strand at 1237.100 kb on - strand at 1237.171 kb on + strand at 1237.171 kb on + strand at 1237.172 kb on - strand at 1237.172 kb on - strand at 1237.172 kb on - strand at 1237.215 kb on - strand at 1237.216 kb on + strand at 1237.217 kb on - strand at 1237.217 kb on - strand at 1237.217 kb on - strand at 1237.233 kb on + strand at 1237.234 kb on - strand at 1237.234 kb on - strand at 1237.274 kb on + strand at 1237.277 kb on - strand at 1237.293 kb on + strand at 1237.293 kb on + strand at 1237.294 kb on - strand at 1237.294 kb on - strand at 1237.294 kb on - strand at 1237.295 kb on + strand at 1237.295 kb on + strand at 1237.295 kb on + strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.323 kb on - strand at 1237.323 kb on - strand at 1237.391 kb on + strand at 1237.407 kb on + strand at 1237.408 kb on - strand at 1237.408 kb on - strand at 1237.497 kb on + strand at 1237.498 kb on - strand at 1237.498 kb on - strand at 1237.498 kb on - strand at 1237.751 kb on + strand, within Psyr_1095 at 1237.853 kb on - strand, within Psyr_1095 at 1237.944 kb on + strand, within Psyr_1095 at 1237.945 kb on - strand, within Psyr_1095 at 1237.945 kb on - strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.963 kb on - strand, within Psyr_1095 at 1237.963 kb on - strand, within Psyr_1095
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM remove 1,236,640 - +0.6 1,236,750 - +0.4 1,236,890 + Psyr_1094 0.56 -0.8 1,236,890 + Psyr_1094 0.56 -1.8 1,236,890 + Psyr_1094 0.56 -1.8 1,236,891 - Psyr_1094 0.57 +0.3 1,236,891 - Psyr_1094 0.57 -1.8 1,236,922 + Psyr_1094 0.71 -1.3 1,236,923 - Psyr_1094 0.72 -1.9 1,236,923 - Psyr_1094 0.72 -0.9 1,237,063 + -1.3 1,237,072 + +0.2 1,237,072 + -0.9 1,237,072 + -0.9 1,237,073 - -1.4 1,237,084 + +0.1 1,237,084 + +0.1 1,237,085 - +0.2 1,237,085 - +0.4 1,237,100 - -2.5 1,237,171 + -1.1 1,237,171 + -1.3 1,237,172 - +0.4 1,237,172 - +0.2 1,237,172 - +0.3 1,237,215 - +0.4 1,237,216 + -0.9 1,237,217 - -1.4 1,237,217 - -0.7 1,237,217 - -0.8 1,237,233 + +0.3 1,237,234 - -0.5 1,237,234 - -3.1 1,237,274 + -0.6 1,237,277 - -0.3 1,237,293 + +0.2 1,237,293 + -0.4 1,237,294 - +1.6 1,237,294 - -0.1 1,237,294 - +0.2 1,237,295 + +0.1 1,237,295 + +0.2 1,237,295 + -0.9 1,237,296 - +0.0 1,237,296 - -0.8 1,237,296 - +0.3 1,237,296 - +1.2 1,237,296 - -0.1 1,237,323 - -1.8 1,237,323 - +0.1 1,237,391 + -0.9 1,237,407 + -0.8 1,237,408 - -0.4 1,237,408 - +1.6 1,237,497 + +0.5 1,237,498 - +2.8 1,237,498 - -0.8 1,237,498 - +0.2 1,237,751 + Psyr_1095 0.32 -0.2 1,237,853 - Psyr_1095 0.41 -1.3 1,237,944 + Psyr_1095 0.49 -1.0 1,237,945 - Psyr_1095 0.49 +0.5 1,237,945 - Psyr_1095 0.49 -0.4 1,237,962 + Psyr_1095 0.50 +0.2 1,237,962 + Psyr_1095 0.50 +0.8 1,237,962 + Psyr_1095 0.50 +0.0 1,237,962 + Psyr_1095 0.50 +2.2 1,237,963 - Psyr_1095 0.51 -1.0 1,237,963 - Psyr_1095 0.51 -1.6
Or see this region's nucleotide sequence