Experiment: KB with Chrysophanol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0905 and Psyr_0906 are separated by 377 nucleotides Psyr_0906 and Psyr_0907 are separated by 158 nucleotides Psyr_0907 and Psyr_0908 are separated by 131 nucleotides
Psyr_0905: Psyr_0905 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,024,669 to 1,026,591
_0905
Psyr_0906: Psyr_0906 - Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer, at 1,026,969 to 1,028,849
_0906
Psyr_0907: Psyr_0907 - conserved hypothetical protein, at 1,029,008 to 1,029,271
_0907
Psyr_0908: Psyr_0908 - FMN-dependent alpha-hydroxy acid dehydrogenase, at 1,029,403 to 1,030,545
_0908
Position (kb) 1026
1027
1028
1029 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1026.027 kb on - strand, within Psyr_0905 at 1026.042 kb on - strand, within Psyr_0905 at 1026.042 kb on - strand, within Psyr_0905 at 1026.326 kb on + strand, within Psyr_0905 at 1026.368 kb on - strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand, within Psyr_0905 at 1026.395 kb on + strand at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.396 kb on - strand, within Psyr_0905 at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.444 kb on + strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.445 kb on - strand at 1026.463 kb on - strand at 1026.463 kb on - strand at 1026.530 kb on - strand at 1026.530 kb on - strand at 1026.559 kb on - strand at 1026.585 kb on + strand at 1026.586 kb on - strand at 1026.626 kb on - strand at 1026.626 kb on - strand at 1026.626 kb on - strand at 1026.639 kb on - strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.645 kb on + strand at 1026.646 kb on - strand at 1026.646 kb on - strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.667 kb on + strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.668 kb on - strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.669 kb on + strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.670 kb on - strand at 1026.776 kb on + strand at 1026.777 kb on - strand at 1026.778 kb on + strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.779 kb on - strand at 1026.804 kb on - strand at 1026.976 kb on + strand at 1026.976 kb on + strand at 1026.989 kb on + strand at 1026.990 kb on - strand at 1026.990 kb on - strand at 1027.015 kb on + strand at 1027.016 kb on - strand at 1027.047 kb on + strand at 1027.048 kb on - strand at 1027.048 kb on - strand at 1027.056 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.067 kb on + strand at 1027.068 kb on - strand at 1027.068 kb on - strand at 1027.068 kb on - strand at 1027.068 kb on - strand at 1027.186 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.263 kb on + strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.264 kb on - strand, within Psyr_0906 at 1027.347 kb on + strand, within Psyr_0906 at 1027.347 kb on + strand, within Psyr_0906 at 1027.347 kb on + strand, within Psyr_0906 at 1027.347 kb on + strand, within Psyr_0906 at 1027.348 kb on - strand, within Psyr_0906 at 1027.392 kb on + strand, within Psyr_0906 at 1027.393 kb on - strand, within Psyr_0906 at 1027.618 kb on - strand, within Psyr_0906 at 1027.694 kb on + strand, within Psyr_0906 at 1027.694 kb on + strand, within Psyr_0906 at 1027.695 kb on - strand, within Psyr_0906 at 1027.728 kb on + strand, within Psyr_0906 at 1027.728 kb on + strand, within Psyr_0906 at 1027.729 kb on - strand, within Psyr_0906 at 1027.729 kb on - strand, within Psyr_0906 at 1027.729 kb on - strand, within Psyr_0906 at 1027.761 kb on + strand, within Psyr_0906 at 1027.761 kb on + strand, within Psyr_0906 at 1027.762 kb on - strand, within Psyr_0906 at 1027.889 kb on + strand, within Psyr_0906 at 1027.889 kb on + strand, within Psyr_0906 at 1027.889 kb on + strand, within Psyr_0906 at 1027.890 kb on - strand, within Psyr_0906 at 1028.014 kb on + strand, within Psyr_0906 at 1028.015 kb on - strand, within Psyr_0906 at 1028.015 kb on - strand, within Psyr_0906 at 1028.015 kb on - strand, within Psyr_0906 at 1028.015 kb on - strand, within Psyr_0906 at 1028.135 kb on + strand, within Psyr_0906 at 1028.136 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.255 kb on - strand, within Psyr_0906 at 1028.548 kb on + strand, within Psyr_0906 at 1028.704 kb on + strand at 1028.704 kb on + strand at 1028.745 kb on - strand at 1028.768 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.853 kb on + strand at 1028.854 kb on - strand at 1028.854 kb on - strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.881 kb on + strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.882 kb on - strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.883 kb on + strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.884 kb on - strand at 1028.888 kb on - strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.919 kb on + strand at 1028.920 kb on - strand at 1029.076 kb on + strand, within Psyr_0907 at 1029.076 kb on + strand, within Psyr_0907 at 1029.076 kb on + strand, within Psyr_0907 at 1029.077 kb on - strand, within Psyr_0907 at 1029.077 kb on - strand, within Psyr_0907 at 1029.258 kb on - strand at 1029.258 kb on - strand at 1029.265 kb on + strand at 1029.265 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.326 kb on + strand at 1029.327 kb on - strand at 1029.327 kb on - strand at 1029.327 kb on - strand at 1029.498 kb on + strand at 1029.507 kb on + strand at 1029.507 kb on + strand at 1029.507 kb on + strand at 1029.508 kb on - strand at 1029.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM remove 1,026,027 - Psyr_0905 0.71 +4.2 1,026,042 - Psyr_0905 0.71 +1.2 1,026,042 - Psyr_0905 0.71 -2.8 1,026,326 + Psyr_0905 0.86 +1.2 1,026,368 - Psyr_0905 0.88 +1.2 1,026,395 + Psyr_0905 0.90 +0.2 1,026,395 + Psyr_0905 0.90 +0.1 1,026,395 + Psyr_0905 0.90 -0.9 1,026,395 + Psyr_0905 0.90 +0.2 1,026,395 + Psyr_0905 0.90 -0.8 1,026,395 + Psyr_0905 0.90 -1.5 1,026,395 + Psyr_0905 0.90 -0.5 1,026,395 + Psyr_0905 0.90 +1.2 1,026,395 + Psyr_0905 0.90 -0.6 1,026,395 + Psyr_0905 0.90 +0.9 1,026,395 + Psyr_0905 0.90 -1.4 1,026,395 + +0.5 1,026,396 - Psyr_0905 0.90 +1.3 1,026,396 - Psyr_0905 0.90 +0.5 1,026,396 - Psyr_0905 0.90 +0.6 1,026,396 - Psyr_0905 0.90 -0.3 1,026,396 - Psyr_0905 0.90 -0.1 1,026,396 - Psyr_0905 0.90 -1.2 1,026,396 - Psyr_0905 0.90 -0.4 1,026,396 - Psyr_0905 0.90 +0.6 1,026,396 - Psyr_0905 0.90 +2.2 1,026,396 - Psyr_0905 0.90 -1.3 1,026,396 - Psyr_0905 0.90 -0.5 1,026,396 - Psyr_0905 0.90 +0.9 1,026,396 - Psyr_0905 0.90 +0.0 1,026,396 - Psyr_0905 0.90 -1.0 1,026,396 - Psyr_0905 0.90 +0.0 1,026,444 + +1.2 1,026,444 + -0.7 1,026,444 + +0.2 1,026,444 + +0.7 1,026,444 + +0.4 1,026,444 + +0.7 1,026,444 + -0.6 1,026,444 + +1.8 1,026,445 - -2.7 1,026,445 - -1.6 1,026,445 - +1.2 1,026,445 - -0.3 1,026,463 - +0.1 1,026,463 - +0.5 1,026,530 - +0.6 1,026,530 - +1.7 1,026,559 - +1.3 1,026,585 + +1.6 1,026,586 - -0.3 1,026,626 - -0.1 1,026,626 - -0.7 1,026,626 - -1.4 1,026,639 - +2.2 1,026,645 + +1.8 1,026,645 + +0.5 1,026,645 + -0.2 1,026,645 + +0.5 1,026,646 - -0.1 1,026,646 - +0.1 1,026,667 + -0.5 1,026,667 + -1.2 1,026,667 + -0.6 1,026,667 + -0.4 1,026,667 + -0.1 1,026,667 + -0.7 1,026,667 + -1.5 1,026,667 + +0.2 1,026,668 - +0.6 1,026,668 - +0.0 1,026,668 - -0.2 1,026,668 - -0.8 1,026,668 - +0.9 1,026,669 + +1.4 1,026,669 + +1.1 1,026,669 + +0.4 1,026,669 + -0.8 1,026,669 + +0.9 1,026,669 + -0.6 1,026,670 - +0.3 1,026,670 - +0.3 1,026,670 - +0.1 1,026,776 + -0.0 1,026,777 - -0.4 1,026,778 + -1.9 1,026,779 - +1.2 1,026,779 - -0.4 1,026,779 - -1.4 1,026,779 - -0.9 1,026,779 - -1.1 1,026,779 - +0.1 1,026,779 - -1.2 1,026,804 - +0.3 1,026,976 + -1.3 1,026,976 + +3.8 1,026,989 + -0.5 1,026,990 - +0.6 1,026,990 - +0.3 1,027,015 + +0.5 1,027,016 - +0.2 1,027,047 + +0.9 1,027,048 - -1.1 1,027,048 - -0.4 1,027,056 + +0.8 1,027,067 + +1.8 1,027,067 + +0.9 1,027,067 + -1.0 1,027,067 + +1.8 1,027,068 - +1.0 1,027,068 - -0.1 1,027,068 - -0.2 1,027,068 - +0.4 1,027,186 + Psyr_0906 0.12 -0.2 1,027,263 + Psyr_0906 0.16 +1.6 1,027,263 + Psyr_0906 0.16 +0.7 1,027,263 + Psyr_0906 0.16 +0.6 1,027,263 + Psyr_0906 0.16 +0.0 1,027,263 + Psyr_0906 0.16 +0.4 1,027,263 + Psyr_0906 0.16 +1.2 1,027,263 + Psyr_0906 0.16 -1.1 1,027,263 + Psyr_0906 0.16 -1.3 1,027,263 + Psyr_0906 0.16 -0.6 1,027,263 + Psyr_0906 0.16 -1.2 1,027,263 + Psyr_0906 0.16 +0.3 1,027,263 + Psyr_0906 0.16 +1.1 1,027,264 - Psyr_0906 0.16 +0.4 1,027,264 - Psyr_0906 0.16 +1.1 1,027,264 - Psyr_0906 0.16 +0.0 1,027,264 - Psyr_0906 0.16 +0.0 1,027,264 - Psyr_0906 0.16 -0.3 1,027,264 - Psyr_0906 0.16 -0.6 1,027,264 - Psyr_0906 0.16 -0.8 1,027,264 - Psyr_0906 0.16 -2.0 1,027,347 + Psyr_0906 0.20 +0.9 1,027,347 + Psyr_0906 0.20 +0.9 1,027,347 + Psyr_0906 0.20 +0.8 1,027,347 + Psyr_0906 0.20 -0.2 1,027,348 - Psyr_0906 0.20 +0.2 1,027,392 + Psyr_0906 0.22 -1.9 1,027,393 - Psyr_0906 0.23 -0.1 1,027,618 - Psyr_0906 0.35 +1.7 1,027,694 + Psyr_0906 0.39 +0.4 1,027,694 + Psyr_0906 0.39 -0.1 1,027,695 - Psyr_0906 0.39 +0.8 1,027,728 + Psyr_0906 0.40 -0.5 1,027,728 + Psyr_0906 0.40 -0.0 1,027,729 - Psyr_0906 0.40 -0.4 1,027,729 - Psyr_0906 0.40 +0.6 1,027,729 - Psyr_0906 0.40 -0.2 1,027,761 + Psyr_0906 0.42 +0.3 1,027,761 + Psyr_0906 0.42 +1.1 1,027,762 - Psyr_0906 0.42 -0.3 1,027,889 + Psyr_0906 0.49 +0.3 1,027,889 + Psyr_0906 0.49 -0.8 1,027,889 + Psyr_0906 0.49 +0.7 1,027,890 - Psyr_0906 0.49 -1.6 1,028,014 + Psyr_0906 0.56 +0.9 1,028,015 - Psyr_0906 0.56 -0.4 1,028,015 - Psyr_0906 0.56 +1.0 1,028,015 - Psyr_0906 0.56 +1.8 1,028,015 - Psyr_0906 0.56 +0.7 1,028,135 + Psyr_0906 0.62 -0.4 1,028,136 - Psyr_0906 0.62 -0.6 1,028,255 - Psyr_0906 0.68 +0.2 1,028,255 - Psyr_0906 0.68 -2.0 1,028,255 - Psyr_0906 0.68 +0.9 1,028,255 - Psyr_0906 0.68 -0.2 1,028,255 - Psyr_0906 0.68 +0.6 1,028,255 - Psyr_0906 0.68 -1.1 1,028,255 - Psyr_0906 0.68 -0.4 1,028,548 + Psyr_0906 0.84 +0.0 1,028,704 + +2.2 1,028,704 + +0.0 1,028,745 - +0.9 1,028,768 + -0.7 1,028,853 + -2.4 1,028,853 + -0.7 1,028,853 + +1.2 1,028,853 + +1.4 1,028,853 + -1.9 1,028,853 + -0.2 1,028,854 - +0.4 1,028,854 - +0.8 1,028,881 + -0.6 1,028,881 + -0.4 1,028,881 + +0.0 1,028,881 + +0.8 1,028,881 + +0.7 1,028,881 + +3.1 1,028,881 + -1.4 1,028,881 + -2.1 1,028,881 + +2.6 1,028,881 + +0.0 1,028,881 + -0.2 1,028,882 - -0.3 1,028,882 - -0.4 1,028,882 - +3.4 1,028,882 - -0.3 1,028,882 - +0.1 1,028,882 - -0.4 1,028,882 - +0.2 1,028,883 + -0.9 1,028,883 + +0.4 1,028,883 + +0.1 1,028,883 + -0.1 1,028,883 + -0.9 1,028,883 + +1.6 1,028,883 + +3.0 1,028,883 + -1.3 1,028,883 + -1.0 1,028,883 + -0.5 1,028,883 + -0.3 1,028,883 + -0.7 1,028,883 + +0.6 1,028,883 + +0.4 1,028,883 + -0.9 1,028,883 + +1.2 1,028,883 + +0.4 1,028,883 + -0.4 1,028,883 + -1.2 1,028,884 - +2.2 1,028,884 - +0.1 1,028,884 - -0.4 1,028,884 - +0.1 1,028,884 - +0.4 1,028,884 - +1.5 1,028,884 - +0.3 1,028,884 - +0.6 1,028,884 - -3.4 1,028,884 - -1.4 1,028,884 - +1.2 1,028,884 - -1.1 1,028,884 - +0.1 1,028,884 - -0.5 1,028,884 - -0.5 1,028,884 - +0.5 1,028,888 - +0.7 1,028,919 + +0.7 1,028,919 + +0.4 1,028,919 + -1.8 1,028,919 + -0.5 1,028,920 - +0.3 1,029,076 + Psyr_0907 0.26 -1.2 1,029,076 + Psyr_0907 0.26 +0.6 1,029,076 + Psyr_0907 0.26 +1.6 1,029,077 - Psyr_0907 0.26 +0.4 1,029,077 - Psyr_0907 0.26 +1.5 1,029,258 - +0.6 1,029,258 - -1.0 1,029,265 + +0.1 1,029,265 + +0.8 1,029,326 + -0.8 1,029,326 + -0.4 1,029,326 + +0.1 1,029,326 + +1.4 1,029,326 + -1.0 1,029,327 - +0.4 1,029,327 - -0.8 1,029,327 - -1.5 1,029,498 + -0.4 1,029,507 + -0.6 1,029,507 + +0.3 1,029,507 + +0.5 1,029,508 - -0.1 1,029,508 - +0.1
Or see this region's nucleotide sequence