Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0114

Experiment: KB with Chrysophanol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Chrysophanol 10 mM
124,047	-		Psyr_0113	0.16	+0.1
124,242	+		Psyr_0113	0.42	+0.4
124,243	-		Psyr_0113	0.43	+0.2
124,265	-		Psyr_0113	0.46	-0.6
124,424	+		Psyr_0113	0.67	-0.4
124,425	-		Psyr_0113	0.67	-0.1
124,425	-		Psyr_0113	0.67	+0.7
124,425	-		Psyr_0113	0.67	-0.2
124,425	-		Psyr_0113	0.67	+0.1
124,425	-		Psyr_0113	0.67	+0.8
124,425	-		Psyr_0113	0.67	-0.2
124,459	+		Psyr_0113	0.72	-1.3
124,519	+		Psyr_0113	0.80	+0.9
124,520	-		Psyr_0113	0.80	+0.9
124,542	+		Psyr_0113	0.83	-0.4
124,542	+		Psyr_0113	0.83	-0.8
124,543	-		Psyr_0113	0.83	+0.1
124,543	-		Psyr_0113	0.83	-0.4
124,557	+		Psyr_0113	0.85	-1.1
124,557	+		Psyr_0113	0.85	-1.7
124,557	+		Psyr_0113	0.85	-0.3
124,599	-				-0.5
124,612	+				-0.6
124,612	+				+0.2
124,612	+				-1.4
124,612	+				-0.6
124,612	+				+0.4
124,613	-				+0.8
124,613	-				+2.4
124,613	-				-0.3
124,629	+				-0.2
124,759	-				-1.4
124,765	-				+0.5
124,765	-				-1.2
124,765	-				+0.3
124,765	-				-0.5
124,765	-				-0.5
124,795	-				-1.6
124,798	+				-0.7
124,798	+				+1.8
124,799	-				-0.6
124,799	-				-0.6
124,834	+				-0.2
124,839	+				+1.0
124,862	-				-0.3
124,864	+				+0.8
124,872	+				+0.0
124,872	+				-0.9
124,872	+				+0.5
124,872	+				-0.3
124,874	+				-0.7
124,874	+				-0.6
124,874	+				+1.2
124,874	+				-0.1
124,874	+				-0.4
124,875	-				+4.4
124,875	-				-0.2
124,875	-				+0.9
124,875	-				-0.5
124,875	-				+0.6
124,875	-				-0.2
124,875	-				-0.6
124,875	-				+0.4
124,875	-				+1.4
124,875	-				-0.2
124,875	-				-0.6
124,875	-				-1.8
124,875	-				-0.6
124,875	-				-0.5
124,897	+				-0.4
124,898	-				+4.2
124,917	+				-1.7
124,917	+				+1.4
124,917	+				-1.3
124,918	-				+0.7
124,918	-				+1.7
124,918	-				-0.6
124,918	-				+0.6
124,969	+				-0.3
124,970	-				+0.8
124,970	-				-0.4
125,044	+				-0.2
125,068	+		Psyr_0114	0.14	+0.0
125,069	-		Psyr_0114	0.15	+0.5
125,131	+		Psyr_0114	0.28	+0.1
125,131	+		Psyr_0114	0.28	-0.8
125,132	-		Psyr_0114	0.28	+0.2
125,132	-		Psyr_0114	0.28	-0.2
125,154	+		Psyr_0114	0.33	+0.7
125,154	+		Psyr_0114	0.33	+0.5
125,154	+		Psyr_0114	0.33	-0.4
125,154	+		Psyr_0114	0.33	-0.1
125,154	+		Psyr_0114	0.33	+0.3
125,154	+		Psyr_0114	0.33	+1.2
125,154	+		Psyr_0114	0.33	+1.5
125,154	+		Psyr_0114	0.33	+1.4
125,154	+		Psyr_0114	0.33	-0.6
125,154	+		Psyr_0114	0.33	-0.1
125,155	-		Psyr_0114	0.34	-1.2
125,155	-		Psyr_0114	0.34	-0.3
125,155	-		Psyr_0114	0.34	+1.7
125,155	-		Psyr_0114	0.34	-0.3
125,155	-		Psyr_0114	0.34	+0.9
125,155	-		Psyr_0114	0.34	-1.4
125,155	-		Psyr_0114	0.34	+1.1
125,155	-		Psyr_0114	0.34	+1.6
125,155	-		Psyr_0114	0.34	+0.3
125,155	-		Psyr_0114	0.34	+0.8
125,155	-		Psyr_0114	0.34	+0.2
125,155	-		Psyr_0114	0.34	-0.8
125,208	-		Psyr_0114	0.45	-1.9
125,223	-		Psyr_0114	0.49	-0.8
125,223	-		Psyr_0114	0.49	-1.0
125,262	+		Psyr_0114	0.57	+1.4
125,262	+		Psyr_0114	0.57	-0.6
125,263	-		Psyr_0114	0.57	-0.1
125,263	-		Psyr_0114	0.57	+0.6
125,453	+				+1.9
125,453	+				-0.3
125,453	+				-1.1
125,453	+				-0.7
125,453	+				-0.4
125,454	-				-1.6
125,454	-				-0.8
125,522	+				-0.7
125,523	-				-1.0
125,561	+				-0.3
125,561	+				-1.7
125,561	+				-0.5
125,610	+				+1.1
125,610	+				-0.0
125,610	+				-0.7
125,610	+				+0.4
125,610	+				+0.3
125,610	+				+1.3
125,610	+				+2.4
125,611	-				+0.5
125,611	-				-0.6
125,611	-				+0.3
125,611	-				-0.5
125,611	-				-0.4
125,611	-				+0.3
125,620	+				-0.2
125,621	-				-2.6
125,649	-				-0.2
125,649	-				+1.4
125,817	+		Psyr_0115	0.29	+0.2
125,817	+		Psyr_0115	0.29	-0.9
125,817	+		Psyr_0115	0.29	+0.7
125,818	-		Psyr_0115	0.29	-0.4
125,818	-		Psyr_0115	0.29	-0.1
125,818	-		Psyr_0115	0.29	-0.5
125,826	+		Psyr_0115	0.30	-0.1
125,826	+		Psyr_0115	0.30	-1.7
125,826	+		Psyr_0115	0.30	-0.7
125,826	+		Psyr_0115	0.30	+0.2
125,827	-		Psyr_0115	0.30	-0.5
125,827	-		Psyr_0115	0.30	-0.3
125,827	-		Psyr_0115	0.30	-0.7
125,886	+		Psyr_0115	0.38	-1.2
125,887	-		Psyr_0115	0.38	+1.7
125,887	-		Psyr_0115	0.38	+2.0
125,887	-		Psyr_0115	0.38	+0.4
125,945	+		Psyr_0115	0.45	+0.2
125,946	-		Psyr_0115	0.45	-0.3
126,004	+		Psyr_0115	0.53	-0.0
126,004	+		Psyr_0115	0.53	+1.1
126,004	+		Psyr_0115	0.53	-1.4
126,005	-		Psyr_0115	0.53	-0.2
126,005	-		Psyr_0115	0.53	+0.9
126,005	-		Psyr_0115	0.53	+0.7
126,012	+		Psyr_0115	0.54	+0.1
126,012	+		Psyr_0115	0.54	+0.4
126,012	+		Psyr_0115	0.54	-0.3
126,012	+		Psyr_0115	0.54	-0.3
126,012	+		Psyr_0115	0.54	+0.5
126,012	+		Psyr_0115	0.54	-0.5
126,012	+		Psyr_0115	0.54	-0.9
126,012	+		Psyr_0115	0.54	+0.8
126,013	-		Psyr_0115	0.54	+0.4
126,013	-		Psyr_0115	0.54	-2.9
126,013	-		Psyr_0115	0.54	+0.7
126,013	-		Psyr_0115	0.54	-0.9
126,013	-		Psyr_0115	0.54	-1.2
126,013	-		Psyr_0115	0.54	-0.6
126,247	-		Psyr_0115	0.85	+2.7
126,366	+				+0.5
126,366	+				-2.7
126,366	+				-0.4
126,367	-				-0.4
126,368	+				-0.1
126,368	+				+0.3
126,368	+				+0.6
126,368	+				+1.2
126,368	+				+1.0
126,368	+				+0.7
126,368	+				-0.6
126,368	+				-0.2
126,368	+				+1.0
126,368	+				-1.1
126,368	+				+2.6
126,368	+				+0.6
126,368	+				-0.4
126,369	-				+0.4
126,369	-				+0.2
126,369	-				+3.4
126,369	-				-0.8
126,369	-				+1.2
126,369	-				-0.9
126,369	-				-0.1
126,369	-				+1.2
126,369	-				-1.7
126,369	-				-1.0
126,369	-				-0.2
126,369	-				+0.8
126,369	-				+0.4
126,369	-				-0.5
126,369	-				-0.5
126,369	-				+0.7
126,369	-				-0.4
126,369	-				+0.0
126,369	-				+2.1
126,438	+				-0.1
126,439	-				+2.3
126,439	-				+0.1