Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20060

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse18; day4
2,300,511	+		BBR_RS20055	0.36	-1.7
2,300,511	+		BBR_RS20055	0.36	-0.9
2,300,511	+		BBR_RS20055	0.36	-2.4
2,300,511	+		BBR_RS20055	0.36	+1.6
2,300,519	-		BBR_RS20055	0.37	+0.7
2,300,522	+		BBR_RS20055	0.37	-1.3
2,300,522	+		BBR_RS20055	0.37	-2.1
2,300,537	+		BBR_RS20055	0.38	-1.3
2,300,538	-		BBR_RS20055	0.38	-1.0
2,300,538	-		BBR_RS20055	0.38	+0.7
2,300,538	-		BBR_RS20055	0.38	+1.5
2,300,545	-		BBR_RS20055	0.38	-0.7
2,300,545	-		BBR_RS20055	0.38	+2.6
2,300,547	+		BBR_RS20055	0.39	-1.1
2,300,547	+		BBR_RS20055	0.39	+0.6
2,300,555	-		BBR_RS20055	0.39	-2.3
2,300,583	+		BBR_RS20055	0.41	-0.1
2,300,590	+		BBR_RS20055	0.42	+3.1
2,300,628	-		BBR_RS20055	0.44	-1.5
2,300,630	+		BBR_RS20055	0.44	+1.8
2,300,635	+		BBR_RS20055	0.45	-2.1
2,300,643	-		BBR_RS20055	0.45	+1.4
2,300,650	+		BBR_RS20055	0.46	+2.7
2,300,650	+		BBR_RS20055	0.46	+2.1
2,300,658	-		BBR_RS20055	0.46	-0.2
2,300,665	-		BBR_RS20055	0.47	+1.7
2,300,667	+		BBR_RS20055	0.47	+1.7
2,300,674	+		BBR_RS20055	0.47	+1.8
2,300,674	+		BBR_RS20055	0.47	+1.3
2,300,674	+		BBR_RS20055	0.47	-3.3
2,300,684	+		BBR_RS20055	0.48	-1.8
2,300,684	+		BBR_RS20055	0.48	+0.3
2,300,711	-		BBR_RS20055	0.50	+0.2
2,300,741	+		BBR_RS20055	0.52	+0.0
2,300,759	+		BBR_RS20055	0.53	-0.3
2,300,787	+		BBR_RS20055	0.55	+1.7
2,300,829	+		BBR_RS20055	0.58	+1.1
2,300,849	+		BBR_RS20055	0.59	-1.4
2,300,858	-		BBR_RS20055	0.60	-0.4
2,300,871	-		BBR_RS20055	0.61	-0.4
2,300,884	-		BBR_RS20055	0.62	+1.7
2,300,927	+		BBR_RS20055	0.64	-0.3
2,300,928	-		BBR_RS20055	0.64	-0.1
2,300,951	-		BBR_RS20055	0.66	-1.7
2,300,955	+		BBR_RS20055	0.66	+0.1
2,300,961	-		BBR_RS20055	0.67	-2.0
2,300,967	+		BBR_RS20055	0.67	-0.2
2,300,974	-		BBR_RS20055	0.68	+0.2
2,300,979	+		BBR_RS20055	0.68	-1.3
2,300,984	-		BBR_RS20055	0.68	+1.3
2,300,987	-		BBR_RS20055	0.68	-0.8
2,300,997	+		BBR_RS20055	0.69	-1.0
2,301,005	-		BBR_RS20055	0.70	+0.0
2,301,013	-		BBR_RS20055	0.70	-0.0
2,301,060	+		BBR_RS20055	0.73	+2.8
2,301,063	-		BBR_RS20055	0.74	-2.2
2,301,063	-		BBR_RS20055	0.74	-2.7
2,301,072	+		BBR_RS20055	0.74	+1.8
2,301,080	+		BBR_RS20055	0.75	+1.5
2,301,091	+		BBR_RS20055	0.76	-2.4
2,301,091	+		BBR_RS20055	0.76	+1.2
2,301,097	-		BBR_RS20055	0.76	-0.8
2,301,097	-		BBR_RS20055	0.76	+0.4
2,301,105	-		BBR_RS20055	0.77	-2.6
2,301,128	+		BBR_RS20055	0.78	+2.3
2,301,136	-		BBR_RS20055	0.79	+0.3
2,301,196	-		BBR_RS20055	0.83	-2.3
2,301,203	+		BBR_RS20055	0.83	-0.9
2,301,221	+		BBR_RS20055	0.84	+0.0
2,301,233	+		BBR_RS20055	0.85	-1.8
2,301,234	-		BBR_RS20055	0.85	+1.2
2,301,241	-		BBR_RS20055	0.86	-1.4
2,301,241	-		BBR_RS20055	0.86	+0.2
2,301,241	-		BBR_RS20055	0.86	-2.6
2,301,241	-		BBR_RS20055	0.86	-1.8
2,301,257	+		BBR_RS20055	0.87	+0.8
2,301,296	+		BBR_RS20055	0.89	-0.7
2,301,308	+				+3.2
2,301,309	+				-2.0
2,301,310	-				+0.4
2,301,311	+				+2.7
2,301,316	-				+3.5
2,301,316	-				+0.6
2,301,322	-				+0.0
2,301,329	+				+0.1
2,301,354	-				-2.1
2,301,440	-				+0.1
2,301,444	+				+0.8
2,301,462	-				+2.5
2,301,475	+				+1.2
2,301,476	-				-0.0
2,301,480	+				+0.5
2,301,493	+				+0.4
2,301,493	+				-1.8
2,301,519	+				-0.1
2,301,550	-				+1.4
2,301,589	+		BBR_RS20060	0.14	-0.9
2,301,605	+		BBR_RS20060	0.17	+1.6
2,301,633	+		BBR_RS20060	0.22	-0.2
2,301,654	-		BBR_RS20060	0.25	+3.4
2,301,654	-		BBR_RS20060	0.25	+2.6
2,301,668	-		BBR_RS20060	0.27	+0.4
2,301,713	+		BBR_RS20060	0.35	-2.7
2,301,713	+		BBR_RS20060	0.35	+0.5
2,301,742	+		BBR_RS20060	0.40	+1.0
2,301,742	+		BBR_RS20060	0.40	+0.1
2,301,742	-		BBR_RS20060	0.40	-1.8
2,301,742	-		BBR_RS20060	0.40	-2.7
2,301,756	+		BBR_RS20060	0.42	+2.0
2,301,756	-		BBR_RS20060	0.42	+2.3
2,301,760	+		BBR_RS20060	0.43	-0.3
2,301,767	-		BBR_RS20060	0.44	+3.2
2,301,841	+		BBR_RS20060	0.56	+1.1
2,301,849	-		BBR_RS20060	0.57	+1.4
2,301,849	-		BBR_RS20060	0.57	-1.1
2,301,849	-		BBR_RS20060	0.57	+0.0
2,301,850	+		BBR_RS20060	0.57	+1.1
2,301,874	+		BBR_RS20060	0.61	+1.8
2,301,882	+		BBR_RS20060	0.63	-2.6
2,301,882	+		BBR_RS20060	0.63	-1.0
2,301,884	-		BBR_RS20060	0.63	-1.3
2,301,889	-		BBR_RS20060	0.64	-0.5
2,301,926	+		BBR_RS20060	0.70	+0.8
2,301,927	-		BBR_RS20060	0.70	+1.7
2,301,943	-		BBR_RS20060	0.73	-0.8
2,301,943	-		BBR_RS20060	0.73	+2.8
2,301,982	+		BBR_RS20060	0.79	-2.9
2,301,990	-		BBR_RS20060	0.81	-0.2
2,301,995	-		BBR_RS20060	0.81	-1.2
2,302,015	+		BBR_RS20060	0.85	-1.2
2,302,016	+		BBR_RS20060	0.85	+1.1
2,302,016	+		BBR_RS20060	0.85	+4.0
2,302,016	+		BBR_RS20060	0.85	-1.0
2,302,019	-		BBR_RS20060	0.85	+3.0
2,302,049	-				-2.7
2,302,066	-				-3.0
2,302,110	+				+0.0
2,302,110	+				-1.5
2,302,113	-				+1.1
2,302,117	+				-0.9
2,302,134	-				+2.7
2,302,139	+				+0.9
2,302,139	+				-1.6
2,302,139	+				+0.7
2,302,139	+				+0.8
2,302,162	+				-1.3
2,302,182	-				-0.2
2,302,187	-				-1.4
2,302,202	+				+0.6
2,302,203	-				+3.1
2,302,218	-				-2.3
2,302,221	+				+0.3
2,302,228	+				+0.2
2,302,269	-				+1.1
2,302,284	-				+2.4
2,302,284	-				+0.5
2,302,284	-				+0.9
2,302,284	-				+2.6
2,302,286	-				+1.9
2,302,286	-				+0.4
2,302,301	-				+0.8
2,302,352	-		BBR_RS20065	0.11	+0.7
2,302,352	-		BBR_RS20065	0.11	-0.4
2,302,364	+		BBR_RS20065	0.13	+1.8
2,302,429	-		BBR_RS20065	0.20	-2.1
2,302,429	-		BBR_RS20065	0.20	+1.7
2,302,429	-		BBR_RS20065	0.20	-0.3
2,302,429	-		BBR_RS20065	0.20	-2.3
2,302,456	-		BBR_RS20065	0.23	-0.3
2,302,484	+		BBR_RS20065	0.27	+0.4
2,302,591	-		BBR_RS20065	0.40	+0.5
2,302,592	-		BBR_RS20065	0.40	+1.7
2,302,612	-		BBR_RS20065	0.42	+3.1
2,302,612	-		BBR_RS20065	0.42	+2.3
2,302,612	-		BBR_RS20065	0.42	+1.1
2,302,640	-		BBR_RS20065	0.45	-1.3
2,302,641	-		BBR_RS20065	0.45	+1.9
2,302,646	-		BBR_RS20065	0.46	+2.8
2,302,657	-		BBR_RS20065	0.47	+0.2
2,302,665	-		BBR_RS20065	0.48	+1.4
2,302,665	-		BBR_RS20065	0.48	+2.5
2,302,666	+		BBR_RS20065	0.48	+2.7
2,302,666	+		BBR_RS20065	0.48	-0.1
2,302,671	+		BBR_RS20065	0.49	-0.2
2,302,674	-		BBR_RS20065	0.49	+1.0
2,302,679	+		BBR_RS20065	0.50	+1.4
2,302,682	+		BBR_RS20065	0.50	+2.6
2,302,682	+		BBR_RS20065	0.50	+2.3
2,302,690	-		BBR_RS20065	0.51	+5.0
2,302,706	+		BBR_RS20065	0.53	+1.9
2,302,706	+		BBR_RS20065	0.53	+3.1
2,302,706	+		BBR_RS20065	0.53	+2.0
2,302,716	+		BBR_RS20065	0.54	+1.1
2,302,724	-		BBR_RS20065	0.55	+0.4
2,302,724	-		BBR_RS20065	0.55	+1.2
2,302,724	-		BBR_RS20065	0.55	+0.3
2,302,730	+		BBR_RS20065	0.56	+2.1
2,302,758	+		BBR_RS20065	0.59	-0.9
2,302,758	+		BBR_RS20065	0.59	+2.7
2,302,758	+		BBR_RS20065	0.59	+1.4
2,302,766	+		BBR_RS20065	0.60	+2.0
2,302,766	+		BBR_RS20065	0.60	-0.9
2,302,766	-		BBR_RS20065	0.60	+2.1
2,302,766	-		BBR_RS20065	0.60	+0.5
2,302,774	-		BBR_RS20065	0.61	+4.9
2,302,774	-		BBR_RS20065	0.61	+5.1
2,302,774	-		BBR_RS20065	0.61	+4.7
2,302,774	-		BBR_RS20065	0.61	+4.5
2,302,774	-		BBR_RS20065	0.61	+0.5
2,302,829	-		BBR_RS20065	0.68	+0.2
2,302,842	+		BBR_RS20065	0.69	+3.3
2,302,842	+		BBR_RS20065	0.69	+1.9
2,302,864	-		BBR_RS20065	0.72	+0.4
2,302,877	-		BBR_RS20065	0.73	+2.4
2,302,886	+		BBR_RS20065	0.74	-0.8
2,302,896	-		BBR_RS20065	0.76	+0.8
2,302,900	+		BBR_RS20065	0.76	+1.1
2,302,904	-		BBR_RS20065	0.77	+5.0
2,302,908	-		BBR_RS20065	0.77	+1.8
2,302,908	-		BBR_RS20065	0.77	+2.4
2,302,908	-		BBR_RS20065	0.77	+0.5
2,302,929	-		BBR_RS20065	0.80	-2.5
2,302,950	+		BBR_RS20065	0.82	+3.0
2,302,983	+		BBR_RS20065	0.86	+2.0
2,303,010	-		BBR_RS20065	0.89	+0.9
2,303,016	-				-2.7
2,303,016	-				+0.1
2,303,016	-				+1.8
2,303,050	+				+5.5
2,303,055	+				+2.1
2,303,058	-				+2.1
2,303,063	-				-0.3
2,303,063	-				-1.0
2,303,063	-				+0.6
2,303,063	-				+3.4
2,303,068	-				+2.4
2,303,068	-				+3.1
2,303,068	-				+1.1
2,303,082	-				+2.5
2,303,085	-				+2.7
2,303,092	-				+2.6
2,303,092	-				+2.6
2,303,092	-				+2.9
2,303,092	-				-0.3