Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15750

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15740 and BBR_RS15745 are separated by 108 nucleotidesBBR_RS15745 and BBR_RS15750 are separated by 23 nucleotidesBBR_RS15750 and BBR_RS15755 are separated by 50 nucleotidesBBR_RS15755 and BBR_RS15760 are separated by 116 nucleotides BBR_RS15740: BBR_RS15740 - RNA polymerase-binding protein RbpA, at 1,302,704 to 1,303,051 _RS15740 BBR_RS15745: BBR_RS15745 - hydrolase or phosphatase, at 1,303,160 to 1,303,879 _RS15745 BBR_RS15750: BBR_RS15750 - hypothetical protein, at 1,303,903 to 1,304,127 _RS15750 BBR_RS15755: BBR_RS15755 - hypothetical protein, at 1,304,178 to 1,304,585 _RS15755 BBR_RS15760: BBR_RS15760 - MerR family transcriptional regulator, at 1,304,702 to 1,305,334 _RS15760 Position (kb) 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1303.099 kb on - strandat 1303.259 kb on + strand, within BBR_RS15745at 1303.636 kb on + strand, within BBR_RS15745at 1303.680 kb on + strand, within BBR_RS15745at 1303.685 kb on + strand, within BBR_RS15745at 1303.698 kb on - strand, within BBR_RS15745at 1303.698 kb on - strand, within BBR_RS15745at 1303.741 kb on + strand, within BBR_RS15745at 1303.749 kb on - strand, within BBR_RS15745at 1303.830 kb on + strandat 1304.099 kb on - strand, within BBR_RS15750at 1304.122 kb on + strandat 1304.130 kb on - strandat 1304.210 kb on + strandat 1304.269 kb on - strand, within BBR_RS15755at 1304.320 kb on - strand, within BBR_RS15755at 1304.501 kb on - strand, within BBR_RS15755at 1304.581 kb on - strandat 1304.583 kb on - strandat 1304.609 kb on - strandat 1304.709 kb on + strandat 1304.839 kb on - strand, within BBR_RS15760at 1304.879 kb on + strand, within BBR_RS15760at 1304.950 kb on - strand, within BBR_RS15760at 1305.003 kb on - strand, within BBR_RS15760at 1305.045 kb on + strand, within BBR_RS15760at 1305.053 kb on - strand, within BBR_RS15760

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse18; day4
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1,303,099 - -1.0
1,303,259 + BBR_RS15745 0.14 +1.5
1,303,636 + BBR_RS15745 0.66 +2.3
1,303,680 + BBR_RS15745 0.72 +0.3
1,303,685 + BBR_RS15745 0.73 +0.5
1,303,698 - BBR_RS15745 0.75 +0.6
1,303,698 - BBR_RS15745 0.75 -0.7
1,303,741 + BBR_RS15745 0.81 -2.8
1,303,749 - BBR_RS15745 0.82 +1.7
1,303,830 + -2.1
1,304,099 - BBR_RS15750 0.87 +2.6
1,304,122 + +4.6
1,304,130 - +1.0
1,304,210 + +0.7
1,304,269 - BBR_RS15755 0.22 -2.2
1,304,320 - BBR_RS15755 0.35 -2.0
1,304,501 - BBR_RS15755 0.79 -0.3
1,304,581 - +2.7
1,304,583 - -0.1
1,304,609 - +0.3
1,304,709 + -2.5
1,304,839 - BBR_RS15760 0.22 -2.8
1,304,879 + BBR_RS15760 0.28 -2.3
1,304,950 - BBR_RS15760 0.39 -2.8
1,305,003 - BBR_RS15760 0.48 -2.0
1,305,045 + BBR_RS15760 0.54 -1.8
1,305,053 - BBR_RS15760 0.55 -3.6

Or see this region's nucleotide sequence