Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13195 and BBR_RS13200 are separated by 26 nucleotides BBR_RS13200 and BBR_RS13205 are separated by 57 nucleotides BBR_RS13205 and BBR_RS13210 are separated by 80 nucleotides
BBR_RS13195: BBR_RS13195 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 736,662 to 737,537
_RS13195
BBR_RS13200: BBR_RS13200 - pyridoxal 5'-phosphate synthase glutaminase subunit PdxT, at 737,564 to 738,202
_RS13200
BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783
_RS13205
BBR_RS13210: BBR_RS13210 - anion transporter, at 739,864 to 741,042
_RS13210
Position (kb) 738
739
740 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 737.277 kb on + strand, within BBR_RS13195 at 737.298 kb on + strand, within BBR_RS13195 at 737.335 kb on - strand, within BBR_RS13195 at 737.361 kb on + strand, within BBR_RS13195 at 737.370 kb on + strand, within BBR_RS13195 at 737.437 kb on + strand, within BBR_RS13195 at 737.437 kb on + strand, within BBR_RS13195 at 737.445 kb on - strand, within BBR_RS13195 at 737.513 kb on + strand at 737.547 kb on + strand at 737.557 kb on + strand at 737.560 kb on - strand at 737.584 kb on - strand at 737.616 kb on - strand at 737.642 kb on - strand, within BBR_RS13200 at 737.653 kb on - strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.830 kb on + strand, within BBR_RS13200 at 737.838 kb on - strand, within BBR_RS13200 at 737.928 kb on + strand, within BBR_RS13200 at 737.931 kb on + strand, within BBR_RS13200 at 737.948 kb on + strand, within BBR_RS13200 at 737.948 kb on + strand, within BBR_RS13200 at 737.955 kb on + strand, within BBR_RS13200 at 737.955 kb on + strand, within BBR_RS13200 at 737.955 kb on - strand, within BBR_RS13200 at 737.963 kb on - strand, within BBR_RS13200 at 737.963 kb on - strand, within BBR_RS13200 at 738.006 kb on + strand, within BBR_RS13200 at 738.033 kb on - strand, within BBR_RS13200 at 738.035 kb on + strand, within BBR_RS13200 at 738.035 kb on + strand, within BBR_RS13200 at 738.077 kb on - strand, within BBR_RS13200 at 738.091 kb on - strand, within BBR_RS13200 at 738.091 kb on - strand, within BBR_RS13200 at 738.131 kb on + strand, within BBR_RS13200 at 738.223 kb on - strand at 738.223 kb on - strand at 738.226 kb on + strand at 738.255 kb on + strand at 738.278 kb on - strand at 738.288 kb on - strand at 738.288 kb on - strand at 738.293 kb on - strand at 738.296 kb on - strand at 738.312 kb on + strand at 738.312 kb on + strand at 738.381 kb on + strand at 738.401 kb on - strand at 738.409 kb on - strand at 738.422 kb on - strand, within BBR_RS13205 at 738.424 kb on - strand, within BBR_RS13205 at 738.431 kb on - strand, within BBR_RS13205 at 738.517 kb on + strand, within BBR_RS13205 at 738.520 kb on - strand, within BBR_RS13205 at 738.539 kb on - strand, within BBR_RS13205 at 738.587 kb on + strand, within BBR_RS13205 at 738.595 kb on - strand, within BBR_RS13205 at 738.649 kb on - strand, within BBR_RS13205 at 738.740 kb on - strand, within BBR_RS13205 at 738.740 kb on - strand, within BBR_RS13205 at 738.828 kb on - strand, within BBR_RS13205 at 738.836 kb on + strand, within BBR_RS13205 at 738.860 kb on - strand, within BBR_RS13205 at 738.879 kb on - strand, within BBR_RS13205 at 738.879 kb on - strand, within BBR_RS13205 at 738.937 kb on - strand, within BBR_RS13205 at 739.024 kb on - strand, within BBR_RS13205 at 739.075 kb on + strand, within BBR_RS13205 at 739.083 kb on - strand, within BBR_RS13205 at 739.083 kb on - strand, within BBR_RS13205 at 739.085 kb on + strand, within BBR_RS13205 at 739.093 kb on - strand, within BBR_RS13205 at 739.093 kb on - strand, within BBR_RS13205 at 739.176 kb on - strand, within BBR_RS13205 at 739.212 kb on - strand, within BBR_RS13205 at 739.229 kb on - strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.236 kb on + strand, within BBR_RS13205 at 739.253 kb on + strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.254 kb on - strand, within BBR_RS13205 at 739.302 kb on + strand, within BBR_RS13205 at 739.302 kb on - strand, within BBR_RS13205 at 739.308 kb on + strand, within BBR_RS13205 at 739.315 kb on + strand, within BBR_RS13205 at 739.316 kb on - strand, within BBR_RS13205 at 739.321 kb on - strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.325 kb on + strand, within BBR_RS13205 at 739.330 kb on + strand, within BBR_RS13205 at 739.331 kb on + strand, within BBR_RS13205 at 739.334 kb on - strand, within BBR_RS13205 at 739.375 kb on - strand, within BBR_RS13205 at 739.398 kb on - strand, within BBR_RS13205 at 739.398 kb on - strand, within BBR_RS13205 at 739.401 kb on + strand, within BBR_RS13205 at 739.419 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.429 kb on + strand, within BBR_RS13205 at 739.433 kb on + strand, within BBR_RS13205 at 739.433 kb on + strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.437 kb on - strand, within BBR_RS13205 at 739.500 kb on - strand, within BBR_RS13205 at 739.523 kb on + strand, within BBR_RS13205 at 739.537 kb on + strand, within BBR_RS13205 at 739.537 kb on + strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.545 kb on - strand, within BBR_RS13205 at 739.547 kb on + strand, within BBR_RS13205 at 739.555 kb on - strand, within BBR_RS13205 at 739.567 kb on - strand, within BBR_RS13205 at 739.578 kb on + strand, within BBR_RS13205 at 739.582 kb on + strand, within BBR_RS13205 at 739.586 kb on - strand, within BBR_RS13205 at 739.607 kb on - strand, within BBR_RS13205 at 739.665 kb on - strand at 739.690 kb on - strand at 739.754 kb on + strand at 739.754 kb on + strand at 739.762 kb on - strand at 739.762 kb on - strand at 739.769 kb on + strand at 739.932 kb on + strand at 739.969 kb on + strand at 739.972 kb on + strand at 739.978 kb on + strand at 739.978 kb on + strand at 740.032 kb on + strand, within BBR_RS13210 at 740.102 kb on - strand, within BBR_RS13210 at 740.104 kb on + strand, within BBR_RS13210 at 740.140 kb on + strand, within BBR_RS13210 at 740.143 kb on - strand, within BBR_RS13210 at 740.194 kb on - strand, within BBR_RS13210 at 740.218 kb on + strand, within BBR_RS13210 at 740.225 kb on - strand, within BBR_RS13210 at 740.244 kb on + strand, within BBR_RS13210 at 740.260 kb on + strand, within BBR_RS13210 at 740.268 kb on - strand, within BBR_RS13210 at 740.268 kb on - strand, within BBR_RS13210 at 740.479 kb on + strand, within BBR_RS13210 at 740.549 kb on - strand, within BBR_RS13210 at 740.595 kb on + strand, within BBR_RS13210 at 740.659 kb on + strand, within BBR_RS13210 at 740.672 kb on - strand, within BBR_RS13210 at 740.677 kb on + strand, within BBR_RS13210 at 740.753 kb on - strand, within BBR_RS13210 at 740.770 kb on - strand, within BBR_RS13210
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse18; day4 remove 737,277 + BBR_RS13195 0.70 -3.0 737,298 + BBR_RS13195 0.73 -1.3 737,335 - BBR_RS13195 0.77 +0.4 737,361 + BBR_RS13195 0.80 -2.9 737,370 + BBR_RS13195 0.81 -2.5 737,437 + BBR_RS13195 0.88 +2.0 737,437 + BBR_RS13195 0.88 -1.6 737,445 - BBR_RS13195 0.89 -2.6 737,513 + +1.1 737,547 + +1.2 737,557 + -2.6 737,560 - -1.6 737,584 - +3.3 737,616 - +1.1 737,642 - BBR_RS13200 0.12 -1.5 737,653 - BBR_RS13200 0.14 +0.0 737,830 + BBR_RS13200 0.42 +0.9 737,830 + BBR_RS13200 0.42 +1.1 737,830 + BBR_RS13200 0.42 -2.3 737,830 + BBR_RS13200 0.42 -1.4 737,830 + BBR_RS13200 0.42 +1.3 737,830 + BBR_RS13200 0.42 -1.7 737,838 - BBR_RS13200 0.43 +1.9 737,928 + BBR_RS13200 0.57 -1.0 737,931 + BBR_RS13200 0.57 -0.6 737,948 + BBR_RS13200 0.60 -0.9 737,948 + BBR_RS13200 0.60 -1.9 737,955 + BBR_RS13200 0.61 +3.7 737,955 + BBR_RS13200 0.61 +3.2 737,955 - BBR_RS13200 0.61 -1.8 737,963 - BBR_RS13200 0.62 -1.8 737,963 - BBR_RS13200 0.62 +2.6 738,006 + BBR_RS13200 0.69 +0.4 738,033 - BBR_RS13200 0.73 +2.5 738,035 + BBR_RS13200 0.74 -2.2 738,035 + BBR_RS13200 0.74 +1.4 738,077 - BBR_RS13200 0.80 +1.5 738,091 - BBR_RS13200 0.82 -1.4 738,091 - BBR_RS13200 0.82 +4.8 738,131 + BBR_RS13200 0.89 -1.8 738,223 - -1.1 738,223 - +0.2 738,226 + +0.9 738,255 + +1.8 738,278 - +1.1 738,288 - +0.3 738,288 - +1.2 738,293 - +1.4 738,296 - +1.2 738,312 + -0.4 738,312 + -2.0 738,381 + +0.7 738,401 - +3.3 738,409 - +2.2 738,422 - BBR_RS13205 0.11 +0.4 738,424 - BBR_RS13205 0.11 +1.8 738,431 - BBR_RS13205 0.11 +1.0 738,517 + BBR_RS13205 0.17 +1.4 738,520 - BBR_RS13205 0.17 -2.4 738,539 - BBR_RS13205 0.18 +3.2 738,587 + BBR_RS13205 0.21 +1.2 738,595 - BBR_RS13205 0.22 -2.2 738,649 - BBR_RS13205 0.26 +1.5 738,740 - BBR_RS13205 0.31 -1.5 738,740 - BBR_RS13205 0.31 -1.3 738,828 - BBR_RS13205 0.37 -2.4 738,836 + BBR_RS13205 0.38 +3.5 738,860 - BBR_RS13205 0.39 +0.0 738,879 - BBR_RS13205 0.41 -0.1 738,879 - BBR_RS13205 0.41 +0.7 738,937 - BBR_RS13205 0.44 -2.0 739,024 - BBR_RS13205 0.50 -1.1 739,075 + BBR_RS13205 0.53 -1.0 739,083 - BBR_RS13205 0.54 +2.9 739,083 - BBR_RS13205 0.54 -2.0 739,085 + BBR_RS13205 0.54 +1.4 739,093 - BBR_RS13205 0.55 -2.6 739,093 - BBR_RS13205 0.55 +0.3 739,176 - BBR_RS13205 0.60 +1.2 739,212 - BBR_RS13205 0.62 +0.9 739,229 - BBR_RS13205 0.64 -0.6 739,236 + BBR_RS13205 0.64 +1.0 739,236 + BBR_RS13205 0.64 +0.8 739,236 + BBR_RS13205 0.64 -2.6 739,253 + BBR_RS13205 0.65 -2.0 739,254 - BBR_RS13205 0.65 +1.5 739,254 - BBR_RS13205 0.65 +0.2 739,254 - BBR_RS13205 0.65 -0.4 739,302 + BBR_RS13205 0.68 -2.7 739,302 - BBR_RS13205 0.68 -3.0 739,308 + BBR_RS13205 0.69 +0.6 739,315 + BBR_RS13205 0.69 -1.7 739,316 - BBR_RS13205 0.69 +0.6 739,321 - BBR_RS13205 0.70 -1.7 739,325 + BBR_RS13205 0.70 +3.2 739,325 + BBR_RS13205 0.70 -2.7 739,325 + BBR_RS13205 0.70 +1.2 739,330 + BBR_RS13205 0.70 -1.3 739,331 + BBR_RS13205 0.70 +0.2 739,334 - BBR_RS13205 0.70 +3.4 739,375 - BBR_RS13205 0.73 -3.1 739,398 - BBR_RS13205 0.75 -4.0 739,398 - BBR_RS13205 0.75 -1.8 739,401 + BBR_RS13205 0.75 +1.9 739,419 + BBR_RS13205 0.76 -0.5 739,429 + BBR_RS13205 0.77 +0.1 739,429 + BBR_RS13205 0.77 -2.0 739,429 + BBR_RS13205 0.77 +0.3 739,429 + BBR_RS13205 0.77 -0.7 739,433 + BBR_RS13205 0.77 -1.5 739,433 + BBR_RS13205 0.77 -0.3 739,437 - BBR_RS13205 0.77 -2.3 739,437 - BBR_RS13205 0.77 +0.8 739,437 - BBR_RS13205 0.77 -2.3 739,500 - BBR_RS13205 0.81 +0.3 739,523 + BBR_RS13205 0.83 +1.3 739,537 + BBR_RS13205 0.84 -1.5 739,537 + BBR_RS13205 0.84 -1.4 739,545 - BBR_RS13205 0.84 +0.3 739,545 - BBR_RS13205 0.84 -2.7 739,545 - BBR_RS13205 0.84 +1.2 739,545 - BBR_RS13205 0.84 +1.3 739,547 + BBR_RS13205 0.84 +1.4 739,555 - BBR_RS13205 0.85 +0.8 739,567 - BBR_RS13205 0.86 +1.0 739,578 + BBR_RS13205 0.86 -0.5 739,582 + BBR_RS13205 0.87 +0.4 739,586 - BBR_RS13205 0.87 -1.9 739,607 - BBR_RS13205 0.88 -2.9 739,665 - +3.7 739,690 - -0.4 739,754 + +0.9 739,754 + +1.2 739,762 - -0.7 739,762 - -1.6 739,769 + +2.6 739,932 + -1.4 739,969 + -3.5 739,972 + -2.7 739,978 + -0.1 739,978 + +0.8 740,032 + BBR_RS13210 0.14 -1.9 740,102 - BBR_RS13210 0.20 -2.9 740,104 + BBR_RS13210 0.20 +1.5 740,140 + BBR_RS13210 0.23 -1.6 740,143 - BBR_RS13210 0.24 -1.8 740,194 - BBR_RS13210 0.28 +1.1 740,218 + BBR_RS13210 0.30 -0.9 740,225 - BBR_RS13210 0.31 -1.0 740,244 + BBR_RS13210 0.32 +0.5 740,260 + BBR_RS13210 0.34 -2.9 740,268 - BBR_RS13210 0.34 -1.6 740,268 - BBR_RS13210 0.34 -2.4 740,479 + BBR_RS13210 0.52 -2.6 740,549 - BBR_RS13210 0.58 -0.6 740,595 + BBR_RS13210 0.62 -1.8 740,659 + BBR_RS13210 0.67 -0.9 740,672 - BBR_RS13210 0.69 +0.4 740,677 + BBR_RS13210 0.69 -0.8 740,753 - BBR_RS13210 0.75 -1.6 740,770 - BBR_RS13210 0.77 -1.5
Or see this region's nucleotide sequence