Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12805

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS20525 and BBR_RS12805 are separated by 109 nucleotidesBBR_RS12805 and BBR_RS12810 are separated by 166 nucleotides BBR_RS20525: BBR_RS20525 - DUF3800 domain-containing protein, at 621,501 to 622,313 _RS20525 BBR_RS12805: BBR_RS12805 - hypothetical protein, at 622,423 to 622,620 _RS12805 BBR_RS12810: BBR_RS12810 - hypothetical protein, at 622,787 to 624,178 _RS12810 Position (kb) 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 621.426 kb on - strandat 621.449 kb on + strandat 621.449 kb on + strandat 621.449 kb on + strandat 621.491 kb on + strandat 621.536 kb on + strandat 621.541 kb on + strandat 621.591 kb on + strand, within BBR_RS20525at 621.599 kb on - strand, within BBR_RS20525at 621.599 kb on - strand, within BBR_RS20525at 621.646 kb on + strand, within BBR_RS20525at 621.695 kb on + strand, within BBR_RS20525at 621.707 kb on + strand, within BBR_RS20525at 621.707 kb on + strand, within BBR_RS20525at 621.707 kb on + strand, within BBR_RS20525at 621.717 kb on - strand, within BBR_RS20525at 621.899 kb on + strand, within BBR_RS20525at 621.912 kb on - strand, within BBR_RS20525at 621.930 kb on + strand, within BBR_RS20525at 621.932 kb on + strand, within BBR_RS20525at 621.938 kb on - strand, within BBR_RS20525at 621.940 kb on - strand, within BBR_RS20525at 621.950 kb on - strand, within BBR_RS20525at 621.954 kb on - strand, within BBR_RS20525at 622.045 kb on + strand, within BBR_RS20525at 622.112 kb on + strand, within BBR_RS20525at 622.174 kb on - strand, within BBR_RS20525at 622.204 kb on - strand, within BBR_RS20525at 622.269 kb on + strandat 622.269 kb on + strandat 622.277 kb on + strandat 622.289 kb on + strandat 622.372 kb on - strandat 622.410 kb on - strandat 622.437 kb on + strandat 622.468 kb on - strand, within BBR_RS12805at 622.470 kb on + strand, within BBR_RS12805at 622.563 kb on + strand, within BBR_RS12805at 622.563 kb on + strand, within BBR_RS12805at 622.607 kb on - strandat 622.632 kb on - strandat 622.749 kb on - strandat 622.759 kb on - strandat 622.771 kb on - strandat 622.786 kb on + strandat 622.793 kb on - strandat 622.802 kb on - strandat 622.827 kb on + strandat 622.839 kb on + strandat 622.882 kb on + strandat 622.884 kb on + strandat 622.890 kb on + strandat 622.892 kb on - strandat 622.914 kb on + strandat 622.914 kb on + strandat 622.936 kb on - strand, within BBR_RS12810at 622.936 kb on - strand, within BBR_RS12810at 622.965 kb on - strand, within BBR_RS12810at 623.015 kb on + strand, within BBR_RS12810at 623.021 kb on + strand, within BBR_RS12810at 623.094 kb on + strand, within BBR_RS12810at 623.103 kb on - strand, within BBR_RS12810at 623.125 kb on - strand, within BBR_RS12810at 623.125 kb on - strand, within BBR_RS12810at 623.132 kb on - strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.198 kb on + strand, within BBR_RS12810at 623.206 kb on - strand, within BBR_RS12810at 623.206 kb on - strand, within BBR_RS12810at 623.224 kb on + strand, within BBR_RS12810at 623.224 kb on + strand, within BBR_RS12810at 623.242 kb on - strand, within BBR_RS12810at 623.277 kb on - strand, within BBR_RS12810at 623.319 kb on - strand, within BBR_RS12810at 623.326 kb on + strand, within BBR_RS12810at 623.326 kb on + strand, within BBR_RS12810at 623.334 kb on - strand, within BBR_RS12810at 623.350 kb on + strand, within BBR_RS12810at 623.350 kb on + strand, within BBR_RS12810at 623.357 kb on - strand, within BBR_RS12810at 623.393 kb on + strand, within BBR_RS12810at 623.409 kb on + strand, within BBR_RS12810at 623.409 kb on + strand, within BBR_RS12810at 623.414 kb on + strand, within BBR_RS12810at 623.417 kb on - strand, within BBR_RS12810at 623.441 kb on - strand, within BBR_RS12810at 623.497 kb on + strand, within BBR_RS12810at 623.572 kb on - strand, within BBR_RS12810at 623.591 kb on + strand, within BBR_RS12810at 623.597 kb on + strand, within BBR_RS12810

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse18; day4
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621,426 - -2.0
621,449 + +0.3
621,449 + +0.6
621,449 + +1.1
621,491 + +1.6
621,536 + -0.5
621,541 + +2.8
621,591 + BBR_RS20525 0.11 +0.1
621,599 - BBR_RS20525 0.12 -2.6
621,599 - BBR_RS20525 0.12 +1.2
621,646 + BBR_RS20525 0.18 +1.1
621,695 + BBR_RS20525 0.24 +0.0
621,707 + BBR_RS20525 0.25 -3.1
621,707 + BBR_RS20525 0.25 -2.4
621,707 + BBR_RS20525 0.25 +0.2
621,717 - BBR_RS20525 0.27 +1.1
621,899 + BBR_RS20525 0.49 -2.1
621,912 - BBR_RS20525 0.51 -2.6
621,930 + BBR_RS20525 0.53 -2.4
621,932 + BBR_RS20525 0.53 +2.5
621,938 - BBR_RS20525 0.54 -1.1
621,940 - BBR_RS20525 0.54 +0.3
621,950 - BBR_RS20525 0.55 +2.5
621,954 - BBR_RS20525 0.56 -1.3
622,045 + BBR_RS20525 0.67 -1.1
622,112 + BBR_RS20525 0.75 +1.9
622,174 - BBR_RS20525 0.83 -1.1
622,204 - BBR_RS20525 0.86 +2.8
622,269 + -0.2
622,269 + +0.3
622,277 + +1.8
622,289 + -0.5
622,372 - +0.9
622,410 - +0.4
622,437 + +0.3
622,468 - BBR_RS12805 0.23 -1.0
622,470 + BBR_RS12805 0.24 +0.0
622,563 + BBR_RS12805 0.71 -3.0
622,563 + BBR_RS12805 0.71 -0.9
622,607 - +0.1
622,632 - +0.2
622,749 - +1.9
622,759 - +1.6
622,771 - +3.0
622,786 + +0.5
622,793 - -2.6
622,802 - -2.2
622,827 + +0.5
622,839 + -2.4
622,882 + +0.9
622,884 + -2.6
622,890 + +0.7
622,892 - -2.5
622,914 + -1.3
622,914 + -1.3
622,936 - BBR_RS12810 0.11 +0.1
622,936 - BBR_RS12810 0.11 -1.1
622,965 - BBR_RS12810 0.13 +1.8
623,015 + BBR_RS12810 0.16 +0.6
623,021 + BBR_RS12810 0.17 +0.4
623,094 + BBR_RS12810 0.22 -1.9
623,103 - BBR_RS12810 0.23 +0.6
623,125 - BBR_RS12810 0.24 +3.7
623,125 - BBR_RS12810 0.24 -2.8
623,132 - BBR_RS12810 0.25 +3.0
623,136 + BBR_RS12810 0.25 -2.0
623,136 + BBR_RS12810 0.25 -1.6
623,136 + BBR_RS12810 0.25 -1.9
623,198 + BBR_RS12810 0.30 +0.8
623,206 - BBR_RS12810 0.30 -2.0
623,206 - BBR_RS12810 0.30 -3.4
623,224 + BBR_RS12810 0.31 -1.9
623,224 + BBR_RS12810 0.31 -2.3
623,242 - BBR_RS12810 0.33 +0.5
623,277 - BBR_RS12810 0.35 +1.0
623,319 - BBR_RS12810 0.38 +0.9
623,326 + BBR_RS12810 0.39 -1.3
623,326 + BBR_RS12810 0.39 -1.0
623,334 - BBR_RS12810 0.39 -1.8
623,350 + BBR_RS12810 0.40 +2.7
623,350 + BBR_RS12810 0.40 -2.3
623,357 - BBR_RS12810 0.41 -1.3
623,393 + BBR_RS12810 0.44 -0.9
623,409 + BBR_RS12810 0.45 -1.1
623,409 + BBR_RS12810 0.45 -2.1
623,414 + BBR_RS12810 0.45 +1.6
623,417 - BBR_RS12810 0.45 -0.7
623,441 - BBR_RS12810 0.47 +1.0
623,497 + BBR_RS12810 0.51 +1.7
623,572 - BBR_RS12810 0.56 -2.0
623,591 + BBR_RS12810 0.58 -2.2
623,597 + BBR_RS12810 0.58 +0.1

Or see this region's nucleotide sequence