Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11340

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse18; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11335 and BBR_RS11340 are separated by 358 nucleotidesBBR_RS11340 and BBR_RS11345 overlap by 52 nucleotides BBR_RS11335: BBR_RS11335 - ATPase AAA, at 293,575 to 294,360 _RS11335 BBR_RS11340: BBR_RS11340 - TetR/AcrR family transcriptional regulator, at 294,719 to 295,354 _RS11340 BBR_RS11345: BBR_RS11345 - 4'-phosphopantetheinyl transferase, at 295,303 to 295,950 _RS11345 Position (kb) 294 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 294.430 kb on + strandat 294.430 kb on + strandat 294.430 kb on + strandat 294.430 kb on + strandat 294.515 kb on + strandat 294.515 kb on + strandat 294.523 kb on - strandat 294.549 kb on + strandat 294.557 kb on - strandat 294.557 kb on - strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.609 kb on + strandat 294.615 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.617 kb on - strandat 294.628 kb on - strandat 294.644 kb on + strandat 294.644 kb on + strandat 294.652 kb on - strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.671 kb on - strandat 294.707 kb on + strandat 294.827 kb on - strand, within BBR_RS11340at 294.835 kb on - strand, within BBR_RS11340at 294.836 kb on + strand, within BBR_RS11340at 294.865 kb on - strand, within BBR_RS11340at 294.868 kb on - strand, within BBR_RS11340at 294.928 kb on - strand, within BBR_RS11340at 294.933 kb on - strand, within BBR_RS11340at 294.935 kb on + strand, within BBR_RS11340at 294.942 kb on + strand, within BBR_RS11340at 294.992 kb on + strand, within BBR_RS11340at 294.993 kb on - strand, within BBR_RS11340at 295.007 kb on + strand, within BBR_RS11340at 295.015 kb on - strand, within BBR_RS11340at 295.015 kb on - strand, within BBR_RS11340at 295.015 kb on - strand, within BBR_RS11340at 295.015 kb on - strand, within BBR_RS11340at 295.015 kb on - strand, within BBR_RS11340at 295.024 kb on + strand, within BBR_RS11340at 295.032 kb on - strand, within BBR_RS11340at 295.043 kb on + strand, within BBR_RS11340at 295.052 kb on + strand, within BBR_RS11340at 295.052 kb on + strand, within BBR_RS11340at 295.062 kb on - strand, within BBR_RS11340at 295.087 kb on - strand, within BBR_RS11340at 295.155 kb on + strand, within BBR_RS11340at 295.195 kb on - strand, within BBR_RS11340at 295.195 kb on - strand, within BBR_RS11340at 295.200 kb on - strand, within BBR_RS11340at 295.200 kb on - strand, within BBR_RS11340at 295.228 kb on + strand, within BBR_RS11340at 295.249 kb on + strand, within BBR_RS11340at 295.256 kb on + strand, within BBR_RS11340at 295.256 kb on + strand, within BBR_RS11340at 295.268 kb on - strand, within BBR_RS11340at 295.278 kb on - strand, within BBR_RS11340at 295.282 kb on + strand, within BBR_RS11340at 295.284 kb on + strand, within BBR_RS11340at 295.290 kb on - strand, within BBR_RS11340at 295.290 kb on - strand, within BBR_RS11340at 295.292 kb on - strandat 295.292 kb on - strandat 295.299 kb on - strandat 295.299 kb on - strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.301 kb on + strandat 295.308 kb on - strandat 295.309 kb on - strandat 295.310 kb on + strandat 295.310 kb on + strandat 295.312 kb on + strandat 295.318 kb on - strandat 295.347 kb on - strandat 295.384 kb on + strand, within BBR_RS11345at 295.402 kb on + strand, within BBR_RS11345at 295.413 kb on + strand, within BBR_RS11345at 295.419 kb on + strand, within BBR_RS11345at 295.423 kb on + strand, within BBR_RS11345at 295.443 kb on + strand, within BBR_RS11345at 295.443 kb on + strand, within BBR_RS11345at 295.448 kb on + strand, within BBR_RS11345at 295.456 kb on - strand, within BBR_RS11345at 295.456 kb on - strand, within BBR_RS11345at 295.478 kb on - strand, within BBR_RS11345at 295.480 kb on + strand, within BBR_RS11345at 295.503 kb on + strand, within BBR_RS11345at 295.503 kb on + strand, within BBR_RS11345at 295.515 kb on - strand, within BBR_RS11345at 295.520 kb on - strand, within BBR_RS11345at 295.520 kb on - strand, within BBR_RS11345at 295.525 kb on - strand, within BBR_RS11345at 295.530 kb on - strand, within BBR_RS11345at 295.535 kb on + strand, within BBR_RS11345at 295.545 kb on + strand, within BBR_RS11345at 295.545 kb on + strand, within BBR_RS11345at 295.547 kb on + strand, within BBR_RS11345at 295.553 kb on - strand, within BBR_RS11345at 295.579 kb on + strand, within BBR_RS11345at 295.587 kb on - strand, within BBR_RS11345at 295.597 kb on + strand, within BBR_RS11345at 295.597 kb on + strand, within BBR_RS11345at 295.610 kb on - strand, within BBR_RS11345at 295.636 kb on + strand, within BBR_RS11345at 295.664 kb on + strand, within BBR_RS11345at 295.664 kb on - strand, within BBR_RS11345at 295.694 kb on + strand, within BBR_RS11345at 295.694 kb on - strand, within BBR_RS11345at 295.697 kb on - strand, within BBR_RS11345at 295.702 kb on - strand, within BBR_RS11345at 295.718 kb on + strand, within BBR_RS11345at 295.719 kb on - strand, within BBR_RS11345at 295.733 kb on - strand, within BBR_RS11345at 295.733 kb on - strand, within BBR_RS11345at 295.742 kb on - strand, within BBR_RS11345at 295.750 kb on + strand, within BBR_RS11345at 295.750 kb on + strand, within BBR_RS11345at 295.758 kb on - strand, within BBR_RS11345at 295.764 kb on - strand, within BBR_RS11345at 295.825 kb on + strand, within BBR_RS11345at 295.881 kb on - strand, within BBR_RS11345at 295.881 kb on - strand, within BBR_RS11345at 295.889 kb on - strandat 295.889 kb on - strandat 295.889 kb on - strandat 295.904 kb on + strandat 295.904 kb on + strandat 295.909 kb on + strandat 295.914 kb on + strandat 295.928 kb on + strandat 295.935 kb on + strandat 295.935 kb on + strandat 295.943 kb on - strandat 295.948 kb on - strandat 295.958 kb on - strandat 295.965 kb on - strandat 295.995 kb on - strandat 296.018 kb on + strandat 296.025 kb on + strandat 296.026 kb on - strandat 296.026 kb on - strandat 296.026 kb on - strandat 296.037 kb on + strandat 296.076 kb on + strandat 296.086 kb on + strandat 296.094 kb on - strandat 296.094 kb on - strandat 296.121 kb on - strandat 296.168 kb on - strandat 296.168 kb on - strandat 296.168 kb on - strandat 296.172 kb on + strandat 296.172 kb on + strandat 296.179 kb on + strandat 296.180 kb on - strandat 296.187 kb on - strandat 296.187 kb on - strandat 296.192 kb on + strandat 296.192 kb on + strandat 296.192 kb on + strandat 296.200 kb on - strandat 296.200 kb on - strandat 296.218 kb on + strandat 296.218 kb on + strandat 296.226 kb on + strandat 296.242 kb on + strandat 296.242 kb on + strandat 296.251 kb on - strandat 296.300 kb on + strandat 296.300 kb on + strandat 296.326 kb on + strandat 296.334 kb on + strandat 296.335 kb on - strandat 296.335 kb on - strandat 296.337 kb on + strandat 296.342 kb on + strandat 296.342 kb on + strandat 296.350 kb on - strandat 296.350 kb on - strandat 296.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse18; day4
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294,430 + -2.2
294,430 + +0.0
294,430 + +0.7
294,430 + -1.9
294,515 + +0.4
294,515 + -0.5
294,523 - +2.7
294,549 + -1.7
294,557 - -0.0
294,557 - -0.4
294,609 + -2.3
294,609 + +2.9
294,609 + -2.3
294,609 + +2.3
294,615 - -3.0
294,617 - +2.4
294,617 - +0.4
294,617 - -1.3
294,617 - -1.6
294,617 - +1.5
294,617 - +4.2
294,617 - -1.5
294,617 - -2.4
294,617 - +2.8
294,617 - -1.6
294,628 - -1.4
294,644 + +1.2
294,644 + +2.1
294,652 - +0.6
294,654 + +0.7
294,654 + -1.7
294,671 - -0.8
294,707 + -1.6
294,827 - BBR_RS11340 0.17 +1.4
294,835 - BBR_RS11340 0.18 +0.4
294,836 + BBR_RS11340 0.18 -1.6
294,865 - BBR_RS11340 0.23 -3.0
294,868 - BBR_RS11340 0.23 -1.4
294,928 - BBR_RS11340 0.33 +0.4
294,933 - BBR_RS11340 0.34 -1.5
294,935 + BBR_RS11340 0.34 +1.1
294,942 + BBR_RS11340 0.35 -1.2
294,992 + BBR_RS11340 0.43 +0.1
294,993 - BBR_RS11340 0.43 +0.2
295,007 + BBR_RS11340 0.45 +0.4
295,015 - BBR_RS11340 0.47 -3.1
295,015 - BBR_RS11340 0.47 -1.1
295,015 - BBR_RS11340 0.47 -2.6
295,015 - BBR_RS11340 0.47 -3.2
295,015 - BBR_RS11340 0.47 -0.9
295,024 + BBR_RS11340 0.48 -2.4
295,032 - BBR_RS11340 0.49 +0.9
295,043 + BBR_RS11340 0.51 +2.8
295,052 + BBR_RS11340 0.52 +0.4
295,052 + BBR_RS11340 0.52 +0.3
295,062 - BBR_RS11340 0.54 +0.6
295,087 - BBR_RS11340 0.58 -1.0
295,155 + BBR_RS11340 0.69 -0.6
295,195 - BBR_RS11340 0.75 +2.2
295,195 - BBR_RS11340 0.75 +2.7
295,200 - BBR_RS11340 0.76 +1.8
295,200 - BBR_RS11340 0.76 -1.3
295,228 + BBR_RS11340 0.80 -1.0
295,249 + BBR_RS11340 0.83 -2.5
295,256 + BBR_RS11340 0.84 +0.6
295,256 + BBR_RS11340 0.84 -3.3
295,268 - BBR_RS11340 0.86 -2.2
295,278 - BBR_RS11340 0.88 -1.6
295,282 + BBR_RS11340 0.89 -1.8
295,284 + BBR_RS11340 0.89 -3.3
295,290 - BBR_RS11340 0.90 +1.0
295,290 - BBR_RS11340 0.90 -0.1
295,292 - -3.2
295,292 - +0.7
295,299 - -2.2
295,299 - -0.7
295,301 + +2.2
295,301 + +2.3
295,301 + -0.4
295,308 - -0.3
295,309 - -3.0
295,310 + -2.2
295,310 + +0.0
295,312 + -2.6
295,318 - -0.3
295,347 - -0.5
295,384 + BBR_RS11345 0.12 -1.4
295,402 + BBR_RS11345 0.15 -0.8
295,413 + BBR_RS11345 0.17 -2.4
295,419 + BBR_RS11345 0.18 -1.7
295,423 + BBR_RS11345 0.19 +0.6
295,443 + BBR_RS11345 0.22 -3.7
295,443 + BBR_RS11345 0.22 +2.6
295,448 + BBR_RS11345 0.22 +0.3
295,456 - BBR_RS11345 0.24 -2.4
295,456 - BBR_RS11345 0.24 -0.9
295,478 - BBR_RS11345 0.27 -2.2
295,480 + BBR_RS11345 0.27 +2.6
295,503 + BBR_RS11345 0.31 -3.3
295,503 + BBR_RS11345 0.31 +1.5
295,515 - BBR_RS11345 0.33 -1.0
295,520 - BBR_RS11345 0.33 -2.3
295,520 - BBR_RS11345 0.33 +1.4
295,525 - BBR_RS11345 0.34 +0.8
295,530 - BBR_RS11345 0.35 +2.9
295,535 + BBR_RS11345 0.36 +2.3
295,545 + BBR_RS11345 0.37 -2.3
295,545 + BBR_RS11345 0.37 -2.9
295,547 + BBR_RS11345 0.38 +1.1
295,553 - BBR_RS11345 0.39 -1.2
295,579 + BBR_RS11345 0.43 +1.2
295,587 - BBR_RS11345 0.44 +0.8
295,597 + BBR_RS11345 0.45 +0.1
295,597 + BBR_RS11345 0.45 -1.3
295,610 - BBR_RS11345 0.47 -2.4
295,636 + BBR_RS11345 0.51 -3.1
295,664 + BBR_RS11345 0.56 -0.3
295,664 - BBR_RS11345 0.56 +0.9
295,694 + BBR_RS11345 0.60 +1.3
295,694 - BBR_RS11345 0.60 +0.0
295,697 - BBR_RS11345 0.61 -2.2
295,702 - BBR_RS11345 0.62 -1.4
295,718 + BBR_RS11345 0.64 +1.9
295,719 - BBR_RS11345 0.64 +2.6
295,733 - BBR_RS11345 0.66 +1.1
295,733 - BBR_RS11345 0.66 +3.4
295,742 - BBR_RS11345 0.68 -1.1
295,750 + BBR_RS11345 0.69 -0.0
295,750 + BBR_RS11345 0.69 -0.6
295,758 - BBR_RS11345 0.70 +0.0
295,764 - BBR_RS11345 0.71 -0.3
295,825 + BBR_RS11345 0.81 -1.0
295,881 - BBR_RS11345 0.89 -1.2
295,881 - BBR_RS11345 0.89 -2.3
295,889 - -2.8
295,889 - +1.3
295,889 - +0.0
295,904 + +0.8
295,904 + +3.2
295,909 + +0.1
295,914 + +1.6
295,928 + +1.8
295,935 + -1.8
295,935 + +1.9
295,943 - -0.1
295,948 - +2.5
295,958 - -0.1
295,965 - +0.0
295,995 - -1.9
296,018 + +1.3
296,025 + +1.3
296,026 - -0.5
296,026 - -2.8
296,026 - -0.7
296,037 + +1.0
296,076 + -3.9
296,086 + -1.4
296,094 - +2.3
296,094 - -1.9
296,121 - -1.0
296,168 - +0.3
296,168 - +0.6
296,168 - +1.9
296,172 + -2.7
296,172 + +0.0
296,179 + +0.6
296,180 - +1.0
296,187 - +0.6
296,187 - +0.6
296,192 + +1.3
296,192 + +1.5
296,192 + -0.3
296,200 - +2.5
296,200 - -2.6
296,218 + +0.7
296,218 + -1.7
296,226 + -2.4
296,242 + +2.2
296,242 + +2.1
296,251 - -1.9
296,300 + +0.1
296,300 + +3.4
296,326 + +0.2
296,334 + +0.6
296,335 - -1.7
296,335 - -0.5
296,337 + +2.9
296,342 + +0.6
296,342 + +0.2
296,350 - -0.1
296,350 - +0.4
296,350 - -1.2

Or see this region's nucleotide sequence