Experiment: Lauric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23255 and ABZR87_RS23260 overlap by 16 nucleotides ABZR87_RS23260 and ABZR87_RS23265 are separated by 66 nucleotides ABZR87_RS23265 and ABZR87_RS23270 are separated by 215 nucleotides ABZR87_RS23270 and ABZR87_RS23275 overlap by 4 nucleotides
ABZR87_RS23255: ABZR87_RS23255 - helix-turn-helix transcriptional regulator, at 1,585,564 to 1,586,403
_RS23255
ABZR87_RS23260: ABZR87_RS23260 - SDR family oxidoreductase, at 1,586,388 to 1,587,086
_RS23260
ABZR87_RS23265: ABZR87_RS23265 - MarR family winged helix-turn-helix transcriptional regulator, at 1,587,153 to 1,587,578
_RS23265
ABZR87_RS23270: ABZR87_RS23270 - hypothetical protein, at 1,587,794 to 1,588,327
_RS23270
ABZR87_RS23275: ABZR87_RS23275 - hypothetical protein, at 1,588,324 to 1,588,833
_RS23275
Position (kb)
1587
1588 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1586.401 kb on + strand at 1586.401 kb on + strand at 1586.402 kb on - strand at 1586.402 kb on - strand at 1586.402 kb on - strand at 1586.563 kb on + strand, within ABZR87_RS23260 at 1586.659 kb on + strand, within ABZR87_RS23260 at 1586.659 kb on + strand, within ABZR87_RS23260 at 1586.659 kb on + strand, within ABZR87_RS23260 at 1586.660 kb on - strand, within ABZR87_RS23260 at 1586.660 kb on - strand, within ABZR87_RS23260 at 1586.660 kb on - strand, within ABZR87_RS23260 at 1586.858 kb on + strand, within ABZR87_RS23260 at 1586.858 kb on + strand, within ABZR87_RS23260 at 1586.859 kb on - strand, within ABZR87_RS23260 at 1586.859 kb on - strand, within ABZR87_RS23260 at 1586.922 kb on + strand, within ABZR87_RS23260 at 1586.923 kb on - strand, within ABZR87_RS23260 at 1586.986 kb on + strand, within ABZR87_RS23260 at 1586.986 kb on + strand, within ABZR87_RS23260 at 1586.987 kb on - strand, within ABZR87_RS23260 at 1586.987 kb on - strand, within ABZR87_RS23260 at 1586.987 kb on - strand, within ABZR87_RS23260 at 1586.987 kb on - strand, within ABZR87_RS23260 at 1586.987 kb on - strand, within ABZR87_RS23260 at 1587.071 kb on + strand at 1587.071 kb on + strand at 1587.071 kb on + strand at 1587.071 kb on + strand at 1587.071 kb on + strand at 1587.071 kb on + strand at 1587.072 kb on - strand at 1587.081 kb on - strand at 1587.081 kb on - strand at 1587.502 kb on + strand, within ABZR87_RS23265 at 1587.503 kb on - strand, within ABZR87_RS23265 at 1587.503 kb on - strand, within ABZR87_RS23265 at 1587.503 kb on - strand, within ABZR87_RS23265 at 1587.518 kb on - strand, within ABZR87_RS23265 at 1587.568 kb on - strand at 1587.633 kb on + strand at 1587.758 kb on + strand at 1587.758 kb on + strand at 1588.465 kb on + strand, within ABZR87_RS23275 at 1588.466 kb on - strand, within ABZR87_RS23275 at 1588.513 kb on + strand, within ABZR87_RS23275 at 1588.513 kb on + strand, within ABZR87_RS23275 at 1588.514 kb on - strand, within ABZR87_RS23275 at 1588.514 kb on - strand, within ABZR87_RS23275 at 1588.514 kb on - strand, within ABZR87_RS23275 at 1588.514 kb on - strand, within ABZR87_RS23275 at 1588.514 kb on - strand, within ABZR87_RS23275
Per-strain Table
Position Strand Gene LocusTag Fraction Lauric (C) remove 1,586,401 + -0.1 1,586,401 + +0.3 1,586,402 - -0.3 1,586,402 - -0.8 1,586,402 - +0.4 1,586,563 + ABZR87_RS23260 0.25 +0.2 1,586,659 + ABZR87_RS23260 0.39 -0.4 1,586,659 + ABZR87_RS23260 0.39 +0.2 1,586,659 + ABZR87_RS23260 0.39 +1.3 1,586,660 - ABZR87_RS23260 0.39 +0.3 1,586,660 - ABZR87_RS23260 0.39 +1.4 1,586,660 - ABZR87_RS23260 0.39 -0.1 1,586,858 + ABZR87_RS23260 0.67 -0.1 1,586,858 + ABZR87_RS23260 0.67 -1.3 1,586,859 - ABZR87_RS23260 0.67 -0.6 1,586,859 - ABZR87_RS23260 0.67 -1.2 1,586,922 + ABZR87_RS23260 0.76 -0.1 1,586,923 - ABZR87_RS23260 0.77 +0.4 1,586,986 + ABZR87_RS23260 0.86 -0.2 1,586,986 + ABZR87_RS23260 0.86 -0.7 1,586,987 - ABZR87_RS23260 0.86 -0.0 1,586,987 - ABZR87_RS23260 0.86 +0.2 1,586,987 - ABZR87_RS23260 0.86 +0.6 1,586,987 - ABZR87_RS23260 0.86 +1.4 1,586,987 - ABZR87_RS23260 0.86 -0.6 1,587,071 + +0.6 1,587,071 + +0.3 1,587,071 + -0.3 1,587,071 + -0.7 1,587,071 + +0.3 1,587,071 + +0.3 1,587,072 - -0.9 1,587,081 - -0.9 1,587,081 - +1.8 1,587,502 + ABZR87_RS23265 0.82 +0.2 1,587,503 - ABZR87_RS23265 0.82 -0.9 1,587,503 - ABZR87_RS23265 0.82 -0.7 1,587,503 - ABZR87_RS23265 0.82 -1.7 1,587,518 - ABZR87_RS23265 0.86 -2.7 1,587,568 - -0.4 1,587,633 + -0.5 1,587,758 + -1.0 1,587,758 + +0.4 1,588,465 + ABZR87_RS23275 0.28 +0.3 1,588,466 - ABZR87_RS23275 0.28 -0.5 1,588,513 + ABZR87_RS23275 0.37 +0.8 1,588,513 + ABZR87_RS23275 0.37 +0.3 1,588,514 - ABZR87_RS23275 0.37 -0.7 1,588,514 - ABZR87_RS23275 0.37 -0.5 1,588,514 - ABZR87_RS23275 0.37 +0.8 1,588,514 - ABZR87_RS23275 0.37 -0.6 1,588,514 - ABZR87_RS23275 0.37 +0.5
Or see this region's nucleotide sequence