Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08380

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08370 and ABZR87_RS08375 are separated by 134 nucleotidesABZR87_RS08375 and ABZR87_RS08380 are separated by 107 nucleotidesABZR87_RS08380 and ABZR87_RS08385 are separated by 81 nucleotidesABZR87_RS08385 and ABZR87_RS08390 are separated by 137 nucleotides ABZR87_RS08370: ABZR87_RS08370 - nuclear transport factor 2 family protein, at 1,781,184 to 1,781,651 _RS08370 ABZR87_RS08375: ABZR87_RS08375 - TetR/AcrR family transcriptional regulator, at 1,781,786 to 1,782,355 _RS08375 ABZR87_RS08380: ABZR87_RS08380 - RidA family protein, at 1,782,463 to 1,782,951 _RS08380 ABZR87_RS08385: ABZR87_RS08385 - SDR family NAD(P)-dependent oxidoreductase, at 1,783,033 to 1,783,767 _RS08385 ABZR87_RS08390: ABZR87_RS08390 - LysR family transcriptional regulator, at 1,783,905 to 1,784,867 _RS08390 Position (kb) 1782 1783Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1781.511 kb on - strand, within ABZR87_RS08370at 1781.516 kb on + strand, within ABZR87_RS08370at 1781.539 kb on + strand, within ABZR87_RS08370at 1781.539 kb on + strand, within ABZR87_RS08370at 1781.540 kb on - strand, within ABZR87_RS08370at 1781.540 kb on - strand, within ABZR87_RS08370at 1781.540 kb on - strand, within ABZR87_RS08370at 1781.570 kb on + strand, within ABZR87_RS08370at 1781.570 kb on + strand, within ABZR87_RS08370at 1781.571 kb on - strand, within ABZR87_RS08370at 1781.571 kb on - strand, within ABZR87_RS08370at 1781.571 kb on - strand, within ABZR87_RS08370at 1781.706 kb on + strandat 1781.773 kb on + strandat 1781.774 kb on - strandat 1781.785 kb on + strandat 1781.786 kb on - strandat 1781.786 kb on - strandat 1781.786 kb on - strandat 1781.786 kb on - strandat 1781.861 kb on + strand, within ABZR87_RS08375at 1781.862 kb on - strand, within ABZR87_RS08375at 1781.862 kb on - strand, within ABZR87_RS08375at 1781.887 kb on + strand, within ABZR87_RS08375at 1781.888 kb on - strand, within ABZR87_RS08375at 1781.933 kb on + strand, within ABZR87_RS08375at 1781.934 kb on - strand, within ABZR87_RS08375at 1781.934 kb on - strand, within ABZR87_RS08375at 1781.942 kb on + strand, within ABZR87_RS08375at 1781.965 kb on + strand, within ABZR87_RS08375at 1781.966 kb on - strand, within ABZR87_RS08375at 1782.033 kb on + strand, within ABZR87_RS08375at 1782.207 kb on + strand, within ABZR87_RS08375at 1782.207 kb on + strand, within ABZR87_RS08375at 1782.207 kb on + strand, within ABZR87_RS08375at 1782.207 kb on + strand, within ABZR87_RS08375at 1782.208 kb on - strand, within ABZR87_RS08375at 1782.208 kb on - strand, within ABZR87_RS08375at 1782.354 kb on - strandat 1782.359 kb on + strandat 1782.359 kb on + strandat 1782.359 kb on + strandat 1782.359 kb on + strandat 1782.359 kb on + strandat 1782.360 kb on - strandat 1782.360 kb on - strandat 1782.360 kb on - strandat 1782.360 kb on - strandat 1782.387 kb on + strandat 1782.387 kb on + strandat 1782.534 kb on - strand, within ABZR87_RS08380at 1782.534 kb on - strand, within ABZR87_RS08380at 1782.685 kb on + strand, within ABZR87_RS08380at 1782.686 kb on - strand, within ABZR87_RS08380at 1782.857 kb on + strand, within ABZR87_RS08380at 1782.920 kb on - strandat 1783.021 kb on - strandat 1783.021 kb on - strandat 1783.103 kb on + strandat 1783.103 kb on + strandat 1783.104 kb on - strandat 1783.179 kb on + strand, within ABZR87_RS08385at 1783.179 kb on + strand, within ABZR87_RS08385at 1783.415 kb on + strand, within ABZR87_RS08385at 1783.415 kb on + strand, within ABZR87_RS08385at 1783.415 kb on + strand, within ABZR87_RS08385at 1783.415 kb on + strand, within ABZR87_RS08385at 1783.415 kb on + strand, within ABZR87_RS08385at 1783.416 kb on - strand, within ABZR87_RS08385at 1783.679 kb on + strand, within ABZR87_RS08385at 1783.679 kb on + strand, within ABZR87_RS08385at 1783.679 kb on + strand, within ABZR87_RS08385at 1783.680 kb on - strand, within ABZR87_RS08385at 1783.785 kb on + strandat 1783.785 kb on + strandat 1783.785 kb on + strandat 1783.786 kb on - strandat 1783.786 kb on - strandat 1783.839 kb on + strandat 1783.839 kb on + strandat 1783.839 kb on + strandat 1783.839 kb on + strandat 1783.840 kb on - strandat 1783.840 kb on - strandat 1783.904 kb on + strandat 1783.905 kb on - strandat 1783.905 kb on - strandat 1783.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,781,511 - ABZR87_RS08370 0.70 +0.2
1,781,516 + ABZR87_RS08370 0.71 -0.4
1,781,539 + ABZR87_RS08370 0.76 +0.2
1,781,539 + ABZR87_RS08370 0.76 +0.2
1,781,540 - ABZR87_RS08370 0.76 +1.4
1,781,540 - ABZR87_RS08370 0.76 +0.0
1,781,540 - ABZR87_RS08370 0.76 +0.1
1,781,570 + ABZR87_RS08370 0.82 +0.0
1,781,570 + ABZR87_RS08370 0.82 +0.6
1,781,571 - ABZR87_RS08370 0.83 +0.5
1,781,571 - ABZR87_RS08370 0.83 -0.9
1,781,571 - ABZR87_RS08370 0.83 +0.4
1,781,706 + -0.0
1,781,773 + -0.2
1,781,774 - +2.3
1,781,785 + +0.4
1,781,786 - -0.7
1,781,786 - +0.0
1,781,786 - +1.5
1,781,786 - +0.8
1,781,861 + ABZR87_RS08375 0.13 -0.0
1,781,862 - ABZR87_RS08375 0.13 +1.0
1,781,862 - ABZR87_RS08375 0.13 +3.0
1,781,887 + ABZR87_RS08375 0.18 +0.1
1,781,888 - ABZR87_RS08375 0.18 -0.2
1,781,933 + ABZR87_RS08375 0.26 +1.7
1,781,934 - ABZR87_RS08375 0.26 -2.1
1,781,934 - ABZR87_RS08375 0.26 -1.5
1,781,942 + ABZR87_RS08375 0.27 -0.5
1,781,965 + ABZR87_RS08375 0.31 +0.3
1,781,966 - ABZR87_RS08375 0.32 -0.7
1,782,033 + ABZR87_RS08375 0.43 -0.4
1,782,207 + ABZR87_RS08375 0.74 -1.6
1,782,207 + ABZR87_RS08375 0.74 -0.8
1,782,207 + ABZR87_RS08375 0.74 -0.6
1,782,207 + ABZR87_RS08375 0.74 -0.9
1,782,208 - ABZR87_RS08375 0.74 -0.9
1,782,208 - ABZR87_RS08375 0.74 +1.0
1,782,354 - +0.2
1,782,359 + +2.0
1,782,359 + +0.3
1,782,359 + +0.3
1,782,359 + +0.2
1,782,359 + +0.3
1,782,360 - +0.3
1,782,360 - -1.0
1,782,360 - -0.3
1,782,360 - +0.7
1,782,387 + -0.0
1,782,387 + +0.9
1,782,534 - ABZR87_RS08380 0.15 -0.3
1,782,534 - ABZR87_RS08380 0.15 -0.3
1,782,685 + ABZR87_RS08380 0.45 -0.6
1,782,686 - ABZR87_RS08380 0.46 -0.8
1,782,857 + ABZR87_RS08380 0.81 -0.6
1,782,920 - +0.2
1,783,021 - +0.9
1,783,021 - -0.0
1,783,103 + -0.7
1,783,103 + +0.2
1,783,104 - +0.6
1,783,179 + ABZR87_RS08385 0.20 -0.0
1,783,179 + ABZR87_RS08385 0.20 +0.9
1,783,415 + ABZR87_RS08385 0.52 +0.5
1,783,415 + ABZR87_RS08385 0.52 +0.3
1,783,415 + ABZR87_RS08385 0.52 -0.6
1,783,415 + ABZR87_RS08385 0.52 -0.3
1,783,415 + ABZR87_RS08385 0.52 -0.3
1,783,416 - ABZR87_RS08385 0.52 +0.0
1,783,679 + ABZR87_RS08385 0.88 +0.8
1,783,679 + ABZR87_RS08385 0.88 -0.3
1,783,679 + ABZR87_RS08385 0.88 -1.3
1,783,680 - ABZR87_RS08385 0.88 +0.9
1,783,785 + +1.0
1,783,785 + -0.6
1,783,785 + +0.3
1,783,786 - +0.6
1,783,786 - -1.8
1,783,839 + +0.6
1,783,839 + +0.4
1,783,839 + +0.3
1,783,839 + +0.8
1,783,840 - +0.3
1,783,840 - +0.4
1,783,904 + -0.5
1,783,905 - -0.6
1,783,905 - -0.0
1,783,905 - +0.0

Or see this region's nucleotide sequence