Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07595

Experiment: Lauric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07585 and ABZR87_RS07590 are separated by 126 nucleotidesABZR87_RS07590 and ABZR87_RS07595 are separated by 63 nucleotidesABZR87_RS07595 and ABZR87_RS07600 are separated by 175 nucleotides ABZR87_RS07585: ABZR87_RS07585 - polymer-forming cytoskeletal protein, at 1,608,973 to 1,609,377 _RS07585 ABZR87_RS07590: ABZR87_RS07590 - iron-sulfur cluster insertion protein ErpA, at 1,609,504 to 1,609,878 _RS07590 ABZR87_RS07595: ABZR87_RS07595 - anhydro-N-acetylmuramic acid kinase, at 1,609,942 to 1,611,096 _RS07595 ABZR87_RS07600: ABZR87_RS07600 - tyrosine--tRNA ligase, at 1,611,272 to 1,612,537 _RS07600 Position (kb) 1609 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1 2at 1608.955 kb on + strandat 1608.956 kb on - strandat 1609.013 kb on + strandat 1609.014 kb on - strand, within ABZR87_RS07585at 1609.014 kb on - strand, within ABZR87_RS07585at 1609.096 kb on + strand, within ABZR87_RS07585at 1609.096 kb on + strand, within ABZR87_RS07585at 1609.097 kb on - strand, within ABZR87_RS07585at 1609.097 kb on - strand, within ABZR87_RS07585at 1609.097 kb on - strand, within ABZR87_RS07585at 1609.264 kb on + strand, within ABZR87_RS07585at 1609.264 kb on + strand, within ABZR87_RS07585at 1609.265 kb on - strand, within ABZR87_RS07585at 1609.265 kb on - strand, within ABZR87_RS07585at 1609.467 kb on + strandat 1609.467 kb on + strandat 1609.893 kb on - strandat 1609.952 kb on + strandat 1609.953 kb on - strandat 1610.017 kb on + strandat 1610.017 kb on + strandat 1610.127 kb on + strand, within ABZR87_RS07595at 1610.128 kb on - strand, within ABZR87_RS07595at 1610.203 kb on + strand, within ABZR87_RS07595at 1610.203 kb on + strand, within ABZR87_RS07595at 1610.203 kb on + strand, within ABZR87_RS07595at 1610.204 kb on - strand, within ABZR87_RS07595at 1610.204 kb on - strand, within ABZR87_RS07595at 1610.204 kb on - strand, within ABZR87_RS07595at 1610.204 kb on - strand, within ABZR87_RS07595at 1610.204 kb on - strand, within ABZR87_RS07595at 1610.451 kb on + strand, within ABZR87_RS07595at 1610.451 kb on + strand, within ABZR87_RS07595at 1610.452 kb on - strand, within ABZR87_RS07595at 1610.452 kb on - strand, within ABZR87_RS07595at 1610.462 kb on + strand, within ABZR87_RS07595at 1610.462 kb on + strand, within ABZR87_RS07595at 1610.462 kb on + strand, within ABZR87_RS07595at 1610.463 kb on - strand, within ABZR87_RS07595at 1610.735 kb on + strand, within ABZR87_RS07595at 1610.736 kb on - strand, within ABZR87_RS07595at 1610.855 kb on + strand, within ABZR87_RS07595at 1610.963 kb on + strand, within ABZR87_RS07595at 1610.963 kb on + strand, within ABZR87_RS07595at 1610.964 kb on - strand, within ABZR87_RS07595at 1610.964 kb on - strand, within ABZR87_RS07595at 1610.964 kb on - strand, within ABZR87_RS07595at 1611.056 kb on + strandat 1611.057 kb on - strandat 1611.057 kb on - strandat 1611.108 kb on + strandat 1611.108 kb on + strandat 1611.109 kb on - strandat 1611.109 kb on - strandat 1611.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
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1,608,955 + -0.2
1,608,956 - +0.1
1,609,013 + -1.9
1,609,014 - ABZR87_RS07585 0.10 +0.6
1,609,014 - ABZR87_RS07585 0.10 -1.4
1,609,096 + ABZR87_RS07585 0.30 -0.9
1,609,096 + ABZR87_RS07585 0.30 +0.4
1,609,097 - ABZR87_RS07585 0.31 +0.3
1,609,097 - ABZR87_RS07585 0.31 -0.1
1,609,097 - ABZR87_RS07585 0.31 -0.2
1,609,264 + ABZR87_RS07585 0.72 -0.3
1,609,264 + ABZR87_RS07585 0.72 -0.5
1,609,265 - ABZR87_RS07585 0.72 +0.2
1,609,265 - ABZR87_RS07585 0.72 -0.1
1,609,467 + +1.0
1,609,467 + -0.3
1,609,893 - +0.9
1,609,952 + -0.5
1,609,953 - +0.3
1,610,017 + +1.1
1,610,017 + +0.4
1,610,127 + ABZR87_RS07595 0.16 +0.7
1,610,128 - ABZR87_RS07595 0.16 +0.7
1,610,203 + ABZR87_RS07595 0.23 +0.7
1,610,203 + ABZR87_RS07595 0.23 +0.7
1,610,203 + ABZR87_RS07595 0.23 -0.3
1,610,204 - ABZR87_RS07595 0.23 +2.1
1,610,204 - ABZR87_RS07595 0.23 +0.5
1,610,204 - ABZR87_RS07595 0.23 +1.3
1,610,204 - ABZR87_RS07595 0.23 +0.7
1,610,204 - ABZR87_RS07595 0.23 +0.8
1,610,451 + ABZR87_RS07595 0.44 +0.2
1,610,451 + ABZR87_RS07595 0.44 +0.1
1,610,452 - ABZR87_RS07595 0.44 +0.5
1,610,452 - ABZR87_RS07595 0.44 +0.2
1,610,462 + ABZR87_RS07595 0.45 +0.7
1,610,462 + ABZR87_RS07595 0.45 +0.5
1,610,462 + ABZR87_RS07595 0.45 +2.1
1,610,463 - ABZR87_RS07595 0.45 +1.4
1,610,735 + ABZR87_RS07595 0.69 +1.0
1,610,736 - ABZR87_RS07595 0.69 +0.9
1,610,855 + ABZR87_RS07595 0.79 +1.2
1,610,963 + ABZR87_RS07595 0.88 +1.5
1,610,963 + ABZR87_RS07595 0.88 +1.0
1,610,964 - ABZR87_RS07595 0.88 +1.2
1,610,964 - ABZR87_RS07595 0.88 +0.3
1,610,964 - ABZR87_RS07595 0.88 +2.2
1,611,056 + -0.3
1,611,057 - +0.1
1,611,057 - +0.6
1,611,108 + -0.2
1,611,108 + -0.3
1,611,109 - +0.3
1,611,109 - -0.8
1,611,109 - -0.3

Or see this region's nucleotide sequence