Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00030

Experiment: Lauric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotidesABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotidesABZR87_RS00030 and ABZR87_RS00035 are separated by 48 nucleotidesABZR87_RS00035 and ABZR87_RS00040 are separated by 75 nucleotides ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292 _RS00020 ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213 _RS00025 ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104 _RS00030 ABZR87_RS00035: ABZR87_RS00035 - ParA family protein, at 9,153 to 9,818 _RS00035 ABZR87_RS00040: ABZR87_RS00040 - cobyric acid synthase, at 9,894 to 11,390 _RS00040 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.272 kb on + strand, within ABZR87_RS00020at 7.278 kb on + strandat 7.278 kb on + strandat 7.278 kb on + strandat 8.199 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.211 kb on + strandat 8.243 kb on + strandat 8.243 kb on + strandat 8.252 kb on + strandat 8.252 kb on + strandat 9.171 kb on - strandat 9.171 kb on - strandat 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.301 kb on + strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.302 kb on - strand, within ABZR87_RS00035at 9.383 kb on + strand, within ABZR87_RS00035at 9.383 kb on + strand, within ABZR87_RS00035at 9.384 kb on - strand, within ABZR87_RS00035at 9.384 kb on - strand, within ABZR87_RS00035at 9.389 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.520 kb on + strand, within ABZR87_RS00035at 9.801 kb on + strandat 9.801 kb on + strandat 9.802 kb on - strandat 9.802 kb on - strandat 9.888 kb on + strandat 9.888 kb on + strandat 9.888 kb on + strandat 9.889 kb on - strandat 9.889 kb on - strandat 9.889 kb on - strandat 9.994 kb on + strandat 9.994 kb on + strandat 9.995 kb on - strandat 9.995 kb on - strandat 10.078 kb on + strand, within ABZR87_RS00040at 10.078 kb on + strand, within ABZR87_RS00040at 10.079 kb on - strand, within ABZR87_RS00040at 10.079 kb on - strand, within ABZR87_RS00040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lauric (C)
remove
7,272 + ABZR87_RS00020 0.89 +1.9
7,272 + ABZR87_RS00020 0.89 +0.1
7,272 + ABZR87_RS00020 0.89 -0.2
7,272 + ABZR87_RS00020 0.89 -0.1
7,272 + ABZR87_RS00020 0.89 +0.5
7,278 + -0.7
7,278 + +0.5
7,278 + +1.1
8,199 + -1.0
8,211 + -0.3
8,211 + -0.6
8,211 + +0.3
8,243 + +1.4
8,243 + -1.3
8,252 + +1.7
8,252 + +1.0
9,171 - -1.1
9,171 - -0.4
9,301 + ABZR87_RS00035 0.22 +0.3
9,301 + ABZR87_RS00035 0.22 +0.3
9,301 + ABZR87_RS00035 0.22 -0.7
9,301 + ABZR87_RS00035 0.22 +0.5
9,301 + ABZR87_RS00035 0.22 +0.5
9,301 + ABZR87_RS00035 0.22 -0.2
9,302 - ABZR87_RS00035 0.22 +0.1
9,302 - ABZR87_RS00035 0.22 +0.4
9,302 - ABZR87_RS00035 0.22 +0.3
9,383 + ABZR87_RS00035 0.35 +0.4
9,383 + ABZR87_RS00035 0.35 +0.8
9,384 - ABZR87_RS00035 0.35 +1.2
9,384 - ABZR87_RS00035 0.35 -0.9
9,389 + ABZR87_RS00035 0.35 +0.0
9,520 + ABZR87_RS00035 0.55 +0.0
9,520 + ABZR87_RS00035 0.55 -0.2
9,520 + ABZR87_RS00035 0.55 +0.2
9,520 + ABZR87_RS00035 0.55 +0.6
9,801 + +1.1
9,801 + -0.6
9,802 - -0.3
9,802 - +0.4
9,888 + -0.1
9,888 + -0.2
9,888 + +0.1
9,889 - -0.3
9,889 - -0.2
9,889 - -0.5
9,994 + +1.2
9,994 + +0.4
9,995 - -0.3
9,995 - -0.2
10,078 + ABZR87_RS00040 0.12 +0.4
10,078 + ABZR87_RS00040 0.12 +1.2
10,079 - ABZR87_RS00040 0.12 +0.0
10,079 - ABZR87_RS00040 0.12 +0.7

Or see this region's nucleotide sequence