Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01869 and SMc01868 are separated by 72 nucleotides SMc01868 and SMc01867 overlap by 4 nucleotides
SMc01869: SMc01869 - transport transmembrane protein, at 2,340,828 to 2,342,138
SMc01869
SMc01868: SMc01868 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 2,342,211 to 2,343,185
SMc01868
SMc01867: SMc01867 - UDP-N-acetylmuramate--L-alanine ligase, at 2,343,182 to 2,344,597
SMc01867
Position (kb)
2342
2343
2344 Strain fitness (log2 ratio)
-2
-1
0
1 at 2341.321 kb on - strand, within SMc01869 at 2341.476 kb on + strand, within SMc01869 at 2341.477 kb on - strand, within SMc01869 at 2341.477 kb on - strand, within SMc01869 at 2341.588 kb on + strand, within SMc01869 at 2341.624 kb on + strand, within SMc01869 at 2341.629 kb on + strand, within SMc01869 at 2341.630 kb on - strand, within SMc01869 at 2341.678 kb on - strand, within SMc01869 at 2341.702 kb on + strand, within SMc01869 at 2341.702 kb on + strand, within SMc01869 at 2341.703 kb on - strand, within SMc01869 at 2341.790 kb on - strand, within SMc01869 at 2341.906 kb on - strand, within SMc01869 at 2341.906 kb on - strand, within SMc01869 at 2342.043 kb on + strand at 2342.043 kb on + strand at 2342.043 kb on + strand at 2342.043 kb on + strand at 2342.068 kb on - strand at 2342.068 kb on - strand at 2342.147 kb on - strand at 2342.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 2,341,321 - SMc01869 0.38 +0.8 2,341,476 + SMc01869 0.49 -0.2 2,341,477 - SMc01869 0.50 +0.6 2,341,477 - SMc01869 0.50 +0.5 2,341,588 + SMc01869 0.58 +0.4 2,341,624 + SMc01869 0.61 +0.3 2,341,629 + SMc01869 0.61 -1.7 2,341,630 - SMc01869 0.61 -0.3 2,341,678 - SMc01869 0.65 -0.4 2,341,702 + SMc01869 0.67 -0.2 2,341,702 + SMc01869 0.67 -0.8 2,341,703 - SMc01869 0.67 -0.4 2,341,790 - SMc01869 0.73 -0.9 2,341,906 - SMc01869 0.82 -0.1 2,341,906 - SMc01869 0.82 -0.5 2,342,043 + -0.6 2,342,043 + +0.6 2,342,043 + +0.4 2,342,043 + -2.2 2,342,068 - +0.2 2,342,068 - +0.7 2,342,147 - -0.3 2,342,147 - -1.4
Or see this region's nucleotide sequence