Strain Fitness in Sinorhizobium meliloti 1021 around SMc01452

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01450 and SMc01451 are separated by 21 nucleotidesSMc01451 and SMc01452 are separated by 82 nucleotidesSMc01452 and SMc01453 are separated by 476 nucleotides SMc01450: SMc01450 - hypothetical protein, at 2,291,666 to 2,292,181 SMc01450 SMc01451: SMc01451 - hypothetical protein, at 2,292,203 to 2,292,418 SMc01451 SMc01452: SMc01452 - hypothetical protein, at 2,292,501 to 2,292,743 SMc01452 SMc01453: SMc01453 - transposase, at 2,293,220 to 2,294,383 SMc01453 Position (kb) 2292 2293Strain fitness (log2 ratio) -1 0 1 2at 2291.514 kb on + strandat 2292.685 kb on + strand, within SMc01452at 2292.686 kb on - strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.694 kb on - strand, within SMc01452at 2292.741 kb on + strandat 2292.742 kb on - strandat 2292.742 kb on - strandat 2292.794 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2293.029 kb on + strandat 2293.029 kb on + strandat 2293.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,291,514 + +0.7
2,292,685 + SMc01452 0.76 -1.1
2,292,686 - SMc01452 0.76 +1.2
2,292,693 + SMc01452 0.79 +0.4
2,292,693 + SMc01452 0.79 +0.1
2,292,693 + SMc01452 0.79 +1.9
2,292,694 - SMc01452 0.79 -1.1
2,292,741 + +0.1
2,292,742 - +0.6
2,292,742 - +2.1
2,292,794 - +1.4
2,292,928 - +0.5
2,292,928 - +0.1
2,292,928 - -0.5
2,292,928 - +0.0
2,293,029 + -1.3
2,293,029 + -0.5
2,293,029 + +0.1

Or see this region's nucleotide sequence