Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01190 and SMc01189 overlap by 4 nucleotides SMc01189 and SMc01188 are separated by 57 nucleotides SMc01188 and SMc01187 are separated by 56 nucleotides
SMc01190: SMc01190 - DNA polymerase III subunit delta', at 1,739,754 to 1,740,785
SMc01190
SMc01189: SMc01189 - thymidylate kinase, at 1,740,782 to 1,741,486
SMc01189
SMc01188: SMc01188 - penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein, at 1,741,544 to 1,742,698
SMc01188
SMc01187: SMc01187 - rare lipoprotein A, at 1,742,755 to 1,743,795
SMc01187
Position (kb)
1741
1742
1743 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1740.728 kb on - strand at 1740.834 kb on - strand at 1741.488 kb on - strand at 1741.488 kb on - strand at 1741.488 kb on - strand at 1742.725 kb on - strand at 1742.725 kb on - strand at 1742.725 kb on - strand at 1742.725 kb on - strand at 1742.725 kb on - strand at 1742.792 kb on + strand at 1742.882 kb on + strand, within SMc01187 at 1742.883 kb on - strand, within SMc01187 at 1742.895 kb on - strand, within SMc01187
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,740,728 - -0.5 1,740,834 - +2.9 1,741,488 - +0.8 1,741,488 - +0.2 1,741,488 - -0.2 1,742,725 - -1.0 1,742,725 - -1.0 1,742,725 - +0.6 1,742,725 - +0.2 1,742,725 - -0.0 1,742,792 + +0.3 1,742,882 + SMc01187 0.12 -2.8 1,742,883 - SMc01187 0.12 -0.0 1,742,895 - SMc01187 0.13 +0.0
Or see this region's nucleotide sequence