Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1591 and SMa1592 overlap by 55 nucleotides SMa1592 and SMa1593 overlap by 295 nucleotides SMa1593 and SMa1594 are separated by 29 nucleotides SMa1594 and SMa1595 are separated by 243 nucleotides
SMa1591: SMa1591 - CyaI3 adenylate/guanylate cyclase, at 884,133 to 887,612
SMa1591
SMa1592: SMa1592 - oxidoreductase, fragment, at 887,558 to 888,271
SMa1592
SMa1593: SMa1593 - oxidoreductase, fragment, at 887,977 to 889,107
SMa1593
SMa1594: SMa1594 - hypothetical protein, at 889,137 to 889,790
SMa1594
SMa1595: SMa1595 - hypothetical protein, at 890,034 to 890,477
SMa1595
Position (kb) 887
888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.101 kb on + strand, within SMa1591 at 887.125 kb on + strand, within SMa1591 at 887.126 kb on - strand, within SMa1591 at 887.126 kb on - strand, within SMa1591 at 887.179 kb on + strand, within SMa1591 at 887.179 kb on + strand, within SMa1591 at 887.259 kb on + strand, within SMa1591 at 887.259 kb on + strand, within SMa1591 at 887.295 kb on + strand at 887.427 kb on - strand at 887.440 kb on - strand at 887.564 kb on + strand at 887.657 kb on - strand, within SMa1592 at 888.096 kb on + strand at 888.261 kb on - strand at 888.333 kb on + strand, within SMa1593 at 888.429 kb on - strand, within SMa1593 at 888.517 kb on - strand, within SMa1593 at 888.536 kb on + strand, within SMa1593 at 888.537 kb on - strand, within SMa1593 at 888.695 kb on + strand, within SMa1593 at 888.695 kb on + strand, within SMa1593 at 888.701 kb on + strand, within SMa1593 at 888.737 kb on + strand, within SMa1593 at 888.738 kb on - strand, within SMa1593 at 888.791 kb on + strand, within SMa1593 at 888.791 kb on + strand, within SMa1593 at 888.836 kb on + strand, within SMa1593 at 888.837 kb on - strand, within SMa1593 at 888.837 kb on - strand, within SMa1593 at 889.001 kb on - strand at 889.022 kb on + strand at 889.156 kb on - strand at 889.184 kb on - strand at 889.184 kb on - strand at 889.200 kb on + strand at 889.201 kb on - strand at 889.205 kb on + strand, within SMa1594 at 889.206 kb on - strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.274 kb on - strand, within SMa1594 at 889.513 kb on + strand, within SMa1594 at 889.514 kb on - strand, within SMa1594 at 889.731 kb on + strand at 889.732 kb on - strand at 889.765 kb on - strand at 889.765 kb on - strand at 889.765 kb on - strand at 889.827 kb on - strand at 889.881 kb on + strand at 889.930 kb on - strand at 889.992 kb on + strand at 889.993 kb on - strand at 889.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 887,101 + SMa1591 0.85 +0.7 887,125 + SMa1591 0.86 -0.2 887,126 - SMa1591 0.86 +0.3 887,126 - SMa1591 0.86 +1.7 887,179 + SMa1591 0.88 +0.6 887,179 + SMa1591 0.88 -0.1 887,259 + SMa1591 0.90 -0.2 887,259 + SMa1591 0.90 +0.9 887,295 + +1.7 887,427 - +1.4 887,440 - -2.9 887,564 + -1.1 887,657 - SMa1592 0.14 -0.5 888,096 + -0.2 888,261 - +0.0 888,333 + SMa1593 0.31 -2.4 888,429 - SMa1593 0.40 +0.6 888,517 - SMa1593 0.48 -0.6 888,536 + SMa1593 0.49 -0.0 888,537 - SMa1593 0.50 +0.0 888,695 + SMa1593 0.63 +0.7 888,695 + SMa1593 0.63 -0.9 888,701 + SMa1593 0.64 +0.6 888,737 + SMa1593 0.67 -0.2 888,738 - SMa1593 0.67 -0.4 888,791 + SMa1593 0.72 +0.0 888,791 + SMa1593 0.72 +1.1 888,836 + SMa1593 0.76 -2.2 888,837 - SMa1593 0.76 +0.1 888,837 - SMa1593 0.76 -0.5 889,001 - -0.1 889,022 + +0.5 889,156 - +0.1 889,184 - -0.2 889,184 - -0.5 889,200 + -0.6 889,201 - +1.2 889,205 + SMa1594 0.10 +0.9 889,206 - SMa1594 0.11 +0.6 889,265 + SMa1594 0.20 -0.7 889,265 + SMa1594 0.20 +0.8 889,265 + SMa1594 0.20 +2.1 889,266 - SMa1594 0.20 -0.3 889,266 - SMa1594 0.20 -0.5 889,266 - SMa1594 0.20 -0.4 889,274 - SMa1594 0.21 +0.1 889,513 + SMa1594 0.57 +0.0 889,514 - SMa1594 0.58 +0.2 889,731 + -0.3 889,732 - +0.3 889,765 - +0.5 889,765 - -0.1 889,765 - -0.9 889,827 - -0.3 889,881 + +0.1 889,930 - +0.8 889,992 + +0.1 889,993 - +0.1 889,993 - -0.5
Or see this region's nucleotide sequence