Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1476 and SMa1478 are separated by 43 nucleotides SMa1478 and SMa1480 are separated by 224 nucleotides
SMa1476: SMa1476 - AraC family transcriptional regulator, at 811,255 to 812,211
SMa1476
SMa1478: SMa1478 - methyltransferase, at 812,255 to 813,790
SMa1478
SMa1480: SMa1480 - LysR family transcriptional regulator, at 814,015 to 814,902
SMa1480
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1
2 at 811.256 kb on + strand at 811.463 kb on + strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.719 kb on - strand, within SMa1476 at 811.799 kb on + strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 812.127 kb on - strand at 812.238 kb on + strand at 812.239 kb on - strand at 812.454 kb on + strand, within SMa1478 at 812.454 kb on + strand, within SMa1478 at 812.455 kb on - strand, within SMa1478 at 812.622 kb on + strand, within SMa1478 at 812.622 kb on + strand, within SMa1478 at 812.623 kb on - strand at 812.623 kb on - strand, within SMa1478 at 812.664 kb on + strand, within SMa1478 at 812.718 kb on + strand, within SMa1478 at 812.781 kb on + strand, within SMa1478 at 812.782 kb on - strand, within SMa1478 at 812.807 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 812.887 kb on - strand, within SMa1478 at 813.246 kb on + strand, within SMa1478 at 813.246 kb on + strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.247 kb on - strand, within SMa1478 at 813.316 kb on + strand, within SMa1478 at 813.664 kb on + strand at 813.696 kb on + strand at 813.697 kb on - strand at 813.850 kb on + strand at 814.039 kb on + strand at 814.039 kb on + strand at 814.040 kb on - strand at 814.107 kb on + strand, within SMa1480 at 814.150 kb on + strand, within SMa1480 at 814.151 kb on - strand, within SMa1480 at 814.261 kb on - strand, within SMa1480 at 814.386 kb on - strand, within SMa1480 at 814.511 kb on + strand, within SMa1480 at 814.512 kb on - strand, within SMa1480 at 814.512 kb on - strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.637 kb on + strand, within SMa1480 at 814.638 kb on - strand, within SMa1480 at 814.638 kb on - strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.750 kb on + strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480 at 814.751 kb on - strand, within SMa1480
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 811,256 + -0.2 811,463 + SMa1476 0.22 +0.4 811,464 - SMa1476 0.22 -0.5 811,464 - SMa1476 0.22 -0.6 811,464 - SMa1476 0.22 +0.8 811,464 - SMa1476 0.22 +0.1 811,718 + SMa1476 0.48 +0.3 811,718 + SMa1476 0.48 +0.6 811,719 - SMa1476 0.48 -0.5 811,799 + SMa1476 0.57 +2.2 811,800 - SMa1476 0.57 -0.7 811,800 - SMa1476 0.57 -0.1 811,800 - SMa1476 0.57 +0.1 811,800 - SMa1476 0.57 -0.4 812,127 - +0.7 812,238 + +0.6 812,239 - -0.3 812,454 + SMa1478 0.13 -0.2 812,454 + SMa1478 0.13 +1.4 812,455 - SMa1478 0.13 -0.1 812,622 + SMa1478 0.24 -0.6 812,622 + SMa1478 0.24 +1.0 812,623 - +0.0 812,623 - SMa1478 0.24 -0.4 812,664 + SMa1478 0.27 +1.0 812,718 + SMa1478 0.30 +0.3 812,781 + SMa1478 0.34 -0.1 812,782 - SMa1478 0.34 +1.0 812,807 - SMa1478 0.36 +0.8 812,887 - SMa1478 0.41 +0.1 812,887 - SMa1478 0.41 +0.1 812,887 - SMa1478 0.41 -0.4 812,887 - SMa1478 0.41 -1.0 813,246 + SMa1478 0.65 +0.7 813,246 + SMa1478 0.65 +1.3 813,247 - SMa1478 0.65 +0.4 813,247 - SMa1478 0.65 +0.1 813,247 - SMa1478 0.65 +0.5 813,247 - SMa1478 0.65 +0.7 813,247 - SMa1478 0.65 +0.4 813,247 - SMa1478 0.65 -0.1 813,316 + SMa1478 0.69 +0.1 813,664 + +0.9 813,696 + -0.8 813,697 - -0.3 813,850 + +0.6 814,039 + -1.0 814,039 + -0.7 814,040 - -0.1 814,107 + SMa1480 0.10 -1.4 814,150 + SMa1480 0.15 -0.1 814,151 - SMa1480 0.15 -0.1 814,261 - SMa1480 0.28 +0.0 814,386 - SMa1480 0.42 -0.4 814,511 + SMa1480 0.56 -0.4 814,512 - SMa1480 0.56 -1.0 814,512 - SMa1480 0.56 -1.1 814,637 + SMa1480 0.70 +0.1 814,637 + SMa1480 0.70 +0.9 814,637 + SMa1480 0.70 -0.4 814,638 - SMa1480 0.70 -0.2 814,638 - SMa1480 0.70 -1.9 814,750 + SMa1480 0.83 +0.6 814,750 + SMa1480 0.83 -0.8 814,750 + SMa1480 0.83 -0.7 814,751 - SMa1480 0.83 +0.1 814,751 - SMa1480 0.83 -0.6 814,751 - SMa1480 0.83 -0.0 814,751 - SMa1480 0.83 -0.6
Or see this region's nucleotide sequence