Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21307 and SM_b21308 are separated by 44 nucleotides SM_b21308 and SM_b21309 overlap by 4 nucleotides
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307 at 970.762 kb on + strand at 970.763 kb on - strand at 970.788 kb on - strand at 970.843 kb on + strand at 970.870 kb on + strand at 970.871 kb on - strand at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.809 kb on + strand, within SM_b21308 at 972.037 kb on + strand at 972.037 kb on + strand at 972.038 kb on - strand at 972.038 kb on - strand at 972.040 kb on - strand at 972.040 kb on - strand at 972.074 kb on + strand at 972.075 kb on - strand at 972.093 kb on + strand at 972.391 kb on - strand, within SM_b21309 at 972.514 kb on - strand, within SM_b21309 at 972.586 kb on - strand, within SM_b21309 at 972.645 kb on + strand, within SM_b21309 at 972.735 kb on + strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 969,853 - -0.5 970,010 + SM_b21307 0.19 +0.5 970,011 - SM_b21307 0.20 -0.0 970,011 - SM_b21307 0.20 -0.9 970,115 + SM_b21307 0.30 -0.0 970,254 + SM_b21307 0.44 +1.3 970,254 + SM_b21307 0.44 +2.7 970,254 + SM_b21307 0.44 +0.2 970,254 + SM_b21307 0.44 -0.0 970,254 + SM_b21307 0.44 -0.8 970,254 + SM_b21307 0.44 +0.2 970,254 + SM_b21307 0.44 -0.3 970,255 - SM_b21307 0.44 +0.5 970,255 - SM_b21307 0.44 -1.1 970,255 - SM_b21307 0.44 +0.1 970,255 - SM_b21307 0.44 -0.1 970,338 - SM_b21307 0.53 -1.3 970,338 - SM_b21307 0.53 +1.3 970,346 + SM_b21307 0.54 -0.0 970,347 - SM_b21307 0.54 -0.3 970,435 + SM_b21307 0.63 +0.6 970,435 + SM_b21307 0.63 +0.1 970,541 + SM_b21307 0.74 +0.0 970,542 - SM_b21307 0.74 +0.8 970,762 + -0.5 970,763 - -0.3 970,788 - -1.3 970,843 + +0.6 970,870 + +0.8 970,871 - +0.7 971,434 + SM_b21308 0.45 -0.7 971,478 + SM_b21308 0.48 -0.2 971,479 - SM_b21308 0.48 +0.1 971,540 + SM_b21308 0.53 -0.3 971,755 + SM_b21308 0.69 +0.3 971,755 + SM_b21308 0.69 -1.5 971,809 + SM_b21308 0.73 -0.8 972,037 + +0.1 972,037 + -0.5 972,038 - -0.1 972,038 - -0.7 972,040 - +0.8 972,040 - +0.4 972,074 + -0.3 972,075 - -0.3 972,093 + -0.5 972,391 - SM_b21309 0.10 -2.5 972,514 - SM_b21309 0.16 -0.2 972,586 - SM_b21309 0.19 +0.1 972,645 + SM_b21309 0.22 +0.1 972,735 + SM_b21309 0.26 -1.7 972,736 - SM_b21309 0.26 +0.5 972,736 - SM_b21309 0.26 +0.7
Or see this region's nucleotide sequence