Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21109 and SM_b21110 are separated by 1 nucleotides SM_b21110 and SM_b21111 overlap by 4 nucleotides SM_b21111 and SM_b21112 are separated by 22 nucleotides SM_b21112 and SM_b21113 are separated by 123 nucleotides
SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) <small>(from data)</small>, at 750,677 to 751,759
_b21109
SM_b21110: SM_b21110 - dehydratase involved in L-fucose catabolism <small>(from data)</small>, at 751,761 to 752,222
_b21110
SM_b21111: SM_b21111 - oxidoreductase, RED superfamily protein, at 752,219 to 752,953
_b21111
SM_b21112: SM_b21112 - L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase <small>(from data)</small>, at 752,976 to 753,821
_b21112
SM_b21113: SM_b21113 - hypothetical protein, at 753,945 to 755,222
_b21113
Position (kb) 752
753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.257 kb on - strand, within SM_b21109 at 751.472 kb on + strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.779 kb on + strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.783 kb on - strand at 751.791 kb on + strand at 751.791 kb on + strand at 752.008 kb on - strand, within SM_b21110 at 752.008 kb on - strand, within SM_b21110 at 752.054 kb on + strand, within SM_b21110 at 752.055 kb on - strand, within SM_b21110 at 752.213 kb on + strand at 752.213 kb on + strand at 752.214 kb on - strand at 752.254 kb on - strand at 752.274 kb on + strand at 752.274 kb on + strand at 752.275 kb on - strand at 752.275 kb on - strand at 752.714 kb on + strand, within SM_b21111 at 752.714 kb on + strand, within SM_b21111 at 752.715 kb on - strand at 752.718 kb on + strand, within SM_b21111 at 752.718 kb on + strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.805 kb on - strand, within SM_b21111 at 752.889 kb on - strand at 752.889 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.925 kb on - strand at 752.992 kb on - strand at 753.064 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.213 kb on + strand, within SM_b21112 at 753.384 kb on + strand, within SM_b21112 at 753.385 kb on - strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.423 kb on + strand, within SM_b21112 at 753.628 kb on - strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.651 kb on + strand, within SM_b21112 at 753.687 kb on - strand, within SM_b21112 at 753.776 kb on - strand at 753.824 kb on + strand at 753.824 kb on + strand at 753.825 kb on - strand at 753.932 kb on + strand at 753.932 kb on + strand at 753.933 kb on - strand at 753.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 751,256 + SM_b21109 0.53 +0.5 751,256 + SM_b21109 0.53 +0.7 751,256 + SM_b21109 0.53 +0.2 751,257 - SM_b21109 0.54 -0.4 751,472 + SM_b21109 0.73 -0.2 751,473 - SM_b21109 0.73 +0.8 751,473 - SM_b21109 0.73 -0.4 751,473 - SM_b21109 0.73 +0.2 751,779 + +0.8 751,783 - -0.0 751,783 - -1.5 751,783 - -0.2 751,783 - -0.1 751,791 + -0.3 751,791 + -0.5 752,008 - SM_b21110 0.53 -0.2 752,008 - SM_b21110 0.53 -0.2 752,054 + SM_b21110 0.63 +2.7 752,055 - SM_b21110 0.64 -0.1 752,213 + -1.1 752,213 + -0.8 752,214 - -1.0 752,254 - +0.1 752,274 + -0.1 752,274 + +0.8 752,275 - +0.3 752,275 - -0.2 752,714 + SM_b21111 0.67 -1.4 752,714 + SM_b21111 0.67 -0.9 752,715 - -1.3 752,718 + SM_b21111 0.68 -2.1 752,718 + SM_b21111 0.68 -1.5 752,805 - SM_b21111 0.80 +0.1 752,805 - SM_b21111 0.80 -0.1 752,889 - -0.1 752,889 - +0.2 752,907 - -2.0 752,907 - -1.5 752,925 - -1.4 752,992 - +0.1 753,064 + SM_b21112 0.10 -0.1 753,213 + SM_b21112 0.28 +0.7 753,213 + SM_b21112 0.28 -0.6 753,384 + SM_b21112 0.48 -0.1 753,385 - SM_b21112 0.48 +0.1 753,423 + SM_b21112 0.53 +0.4 753,423 + SM_b21112 0.53 +0.8 753,628 - SM_b21112 0.77 +0.7 753,651 + SM_b21112 0.80 -0.5 753,651 + SM_b21112 0.80 +0.1 753,687 - SM_b21112 0.84 +0.5 753,776 - -0.3 753,824 + -0.1 753,824 + -0.2 753,825 - -0.5 753,932 + +0.7 753,932 + +0.9 753,933 - +0.1 753,933 - +0.0
Or see this region's nucleotide sequence