Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20756 and SM_b20757 are separated by 225 nucleotides SM_b20757 and SM_b20758 are separated by 11 nucleotides SM_b20758 and SM_b20759 are separated by 122 nucleotides
SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753
_b20756
SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117
_b20757
SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863
_b20758
SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456
_b20759
Position (kb)
1548
1549
1550
1551
1552 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1548.086 kb on - strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.440 kb on + strand, within SM_b20756 at 1548.658 kb on - strand at 1548.816 kb on + strand at 1549.178 kb on - strand at 1549.208 kb on - strand, within SM_b20757 at 1549.246 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.571 kb on - strand, within SM_b20757 at 1549.576 kb on + strand, within SM_b20757 at 1549.577 kb on - strand at 1549.623 kb on + strand, within SM_b20757 at 1549.738 kb on + strand, within SM_b20757 at 1549.967 kb on - strand, within SM_b20757 at 1550.162 kb on - strand, within SM_b20757 at 1550.162 kb on - strand, within SM_b20757 at 1550.164 kb on + strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.632 kb on - strand, within SM_b20757 at 1550.635 kb on + strand, within SM_b20757 at 1550.636 kb on - strand, within SM_b20757 at 1550.647 kb on + strand, within SM_b20757 at 1551.004 kb on + strand at 1551.004 kb on + strand at 1551.005 kb on - strand at 1551.011 kb on - strand at 1551.201 kb on + strand at 1551.371 kb on - strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.410 kb on - strand, within SM_b20758 at 1551.773 kb on - strand, within SM_b20758 at 1551.823 kb on - strand at 1551.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,548,086 - SM_b20756 0.67 +1.6 1,548,313 + SM_b20756 0.78 +0.6 1,548,313 + SM_b20756 0.78 +2.2 1,548,313 + SM_b20756 0.78 -0.9 1,548,314 - SM_b20756 0.78 +0.3 1,548,314 - SM_b20756 0.78 -0.5 1,548,440 + SM_b20756 0.84 -0.2 1,548,658 - -0.0 1,548,816 + -0.0 1,549,178 - -1.9 1,549,208 - SM_b20757 0.11 +1.1 1,549,246 + SM_b20757 0.12 -1.5 1,549,570 + SM_b20757 0.28 +0.1 1,549,570 + SM_b20757 0.28 +0.1 1,549,571 - SM_b20757 0.28 -1.9 1,549,576 + SM_b20757 0.28 -1.3 1,549,577 - +0.6 1,549,623 + SM_b20757 0.30 -1.2 1,549,738 + SM_b20757 0.35 -1.4 1,549,967 - SM_b20757 0.46 -2.3 1,550,162 - SM_b20757 0.55 -0.6 1,550,162 - SM_b20757 0.55 -0.3 1,550,164 + SM_b20757 0.55 -1.3 1,550,351 - SM_b20757 0.64 -1.1 1,550,351 - SM_b20757 0.64 -0.7 1,550,632 - SM_b20757 0.77 +1.6 1,550,635 + SM_b20757 0.77 -1.3 1,550,636 - SM_b20757 0.77 -0.2 1,550,647 + SM_b20757 0.78 -0.9 1,551,004 + -0.9 1,551,004 + -1.4 1,551,005 - -0.7 1,551,011 - +0.3 1,551,201 + -0.9 1,551,371 - SM_b20758 0.33 -1.4 1,551,409 + SM_b20758 0.38 +1.6 1,551,409 + SM_b20758 0.38 -1.3 1,551,410 - SM_b20758 0.38 -2.1 1,551,773 - SM_b20758 0.88 -0.7 1,551,823 - -0.4 1,551,944 - +2.5
Or see this region's nucleotide sequence