Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20363 and SM_b20364 overlap by 4 nucleotides SM_b20364 and SM_b20365 are separated by 174 nucleotides
SM_b20363: SM_b20363 - iron ABC transporter ATP-binding protein, at 373,363 to 374,424
_b20363
SM_b20364: SM_b20364 - iron ABC transporter permease, at 374,421 to 376,649
_b20364
SM_b20365: SM_b20365 - iron ABC transporter substrate-binding protein, at 376,824 to 377,852
_b20365
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.488 kb on - strand, within SM_b20363 at 373.509 kb on - strand, within SM_b20363 at 373.509 kb on - strand, within SM_b20363 at 373.844 kb on + strand, within SM_b20363 at 374.098 kb on - strand, within SM_b20363 at 374.117 kb on + strand, within SM_b20363 at 374.160 kb on - strand, within SM_b20363 at 374.205 kb on + strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.206 kb on - strand, within SM_b20363 at 374.383 kb on + strand at 374.383 kb on + strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.384 kb on - strand at 374.609 kb on + strand at 374.612 kb on - strand at 374.612 kb on - strand at 374.612 kb on - strand at 374.923 kb on + strand, within SM_b20364 at 374.923 kb on + strand, within SM_b20364 at 375.020 kb on - strand, within SM_b20364 at 375.157 kb on + strand, within SM_b20364 at 375.157 kb on + strand, within SM_b20364 at 375.158 kb on - strand, within SM_b20364 at 375.158 kb on - strand at 375.158 kb on - strand, within SM_b20364 at 375.696 kb on - strand, within SM_b20364 at 375.887 kb on - strand, within SM_b20364 at 375.887 kb on - strand, within SM_b20364 at 376.043 kb on + strand, within SM_b20364 at 376.576 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.654 kb on - strand at 376.695 kb on + strand at 376.695 kb on + strand at 376.696 kb on - strand at 376.696 kb on - strand at 376.894 kb on + strand at 376.894 kb on + strand at 376.895 kb on - strand at 376.910 kb on - strand at 376.910 kb on - strand at 377.039 kb on - strand, within SM_b20365 at 377.275 kb on + strand, within SM_b20365 at 377.329 kb on + strand, within SM_b20365 at 377.330 kb on - strand, within SM_b20365 at 377.449 kb on + strand, within SM_b20365 at 377.473 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 373,488 - SM_b20363 0.12 -0.3 373,509 - SM_b20363 0.14 +0.4 373,509 - SM_b20363 0.14 -0.1 373,844 + SM_b20363 0.45 -0.1 374,098 - SM_b20363 0.69 +1.4 374,117 + SM_b20363 0.71 +1.3 374,160 - SM_b20363 0.75 -0.4 374,205 + SM_b20363 0.79 -1.3 374,206 - SM_b20363 0.79 +1.2 374,206 - SM_b20363 0.79 -0.4 374,206 - SM_b20363 0.79 +0.6 374,383 + -0.2 374,383 + +0.4 374,384 - -0.3 374,384 - +0.2 374,384 - +0.1 374,384 - +0.6 374,384 - +0.1 374,609 + -1.1 374,612 - -2.0 374,612 - +0.9 374,612 - -0.6 374,923 + SM_b20364 0.23 +1.7 374,923 + SM_b20364 0.23 -0.1 375,020 - SM_b20364 0.27 +2.5 375,157 + SM_b20364 0.33 +0.8 375,157 + SM_b20364 0.33 -0.5 375,158 - SM_b20364 0.33 -1.5 375,158 - +0.0 375,158 - SM_b20364 0.33 +0.6 375,696 - SM_b20364 0.57 -0.4 375,887 - SM_b20364 0.66 +0.2 375,887 - SM_b20364 0.66 +0.6 376,043 + SM_b20364 0.73 +0.6 376,576 + +0.3 376,653 + -0.2 376,653 + +0.8 376,653 + +1.6 376,654 - -1.6 376,695 + +1.4 376,695 + +0.4 376,696 - -0.5 376,696 - -0.1 376,894 + -3.0 376,894 + +0.0 376,895 - -0.3 376,910 - -0.8 376,910 - +0.6 377,039 - SM_b20365 0.21 +1.0 377,275 + SM_b20365 0.44 +0.7 377,329 + SM_b20365 0.49 +0.1 377,330 - SM_b20365 0.49 -1.0 377,449 + SM_b20365 0.61 -0.2 377,473 + SM_b20365 0.63 +1.1 377,554 + SM_b20365 0.71 +0.1 377,554 + SM_b20365 0.71 -0.1
Or see this region's nucleotide sequence