Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19910

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse17; day4
2,266,285	-				+0.9
2,266,291	+				-1.5
2,266,295	-				-0.5
2,266,298	+				-0.5
2,266,298	+				-0.9
2,266,298	+				+0.1
2,266,298	+				+0.1
2,266,306	-				-1.6
2,266,306	-				+1.0
2,266,306	-				-1.2
2,266,306	-				+0.7
2,266,306	-				-0.6
2,266,306	-				-1.1
2,266,308	-				-1.7
2,266,319	+				-1.7
2,266,338	-				-0.4
2,266,342	+				-1.0
2,266,342	+				-0.9
2,266,342	+				+0.1
2,266,363	-				+2.7
2,266,377	+				-0.5
2,266,378	-				-0.7
2,266,382	+				-0.7
2,266,396	-				-0.1
2,266,402	+				-0.4
2,266,402	+				-0.7
2,266,410	-				+0.2
2,266,410	-				-1.1
2,266,422	-				+0.6
2,266,422	-				-0.5
2,266,459	+				+0.0
2,266,469	+				-1.9
2,266,469	+				+0.1
2,266,469	+				-1.2
2,266,477	-				+1.8
2,266,477	-				-1.9
2,266,488	-				+0.3
2,266,522	-				-1.2
2,266,526	-				-0.2
2,266,543	+				+0.6
2,266,551	-				-1.7
2,266,561	-				-2.0
2,266,561	-				+0.2
2,266,571	-				-1.3
2,266,576	-				-0.7
2,266,576	-				-1.6
2,266,576	-				-0.6
2,266,582	+				+1.7
2,266,582	+				+1.1
2,266,585	+				+0.4
2,266,585	+				+0.7
2,266,590	-				-0.8
2,266,593	-				+0.4
2,266,594	+				-0.1
2,266,598	-		BBR_RS19910	0.10	-0.2
2,266,602	-		BBR_RS19910	0.11	-0.5
2,266,609	+		BBR_RS19910	0.12	+3.0
2,266,609	+		BBR_RS19910	0.12	+2.0
2,266,617	-		BBR_RS19910	0.13	-1.7
2,266,617	-		BBR_RS19910	0.13	-0.2
2,266,623	+		BBR_RS19910	0.14	+0.9
2,266,633	+		BBR_RS19910	0.16	-0.5
2,266,633	+		BBR_RS19910	0.16	+0.7
2,266,633	+		BBR_RS19910	0.16	-0.2
2,266,636	-		BBR_RS19910	0.16	-0.4
2,266,641	-		BBR_RS19910	0.17	-0.7
2,266,641	-		BBR_RS19910	0.17	-0.6
2,266,641	-		BBR_RS19910	0.17	+0.9
2,266,641	-		BBR_RS19910	0.17	-0.7
2,266,652	+		BBR_RS19910	0.19	+1.2
2,266,677	-		BBR_RS19910	0.23	-1.1
2,266,689	-		BBR_RS19910	0.25	+0.6
2,266,694	-		BBR_RS19910	0.25	-0.8
2,266,694	-		BBR_RS19910	0.25	+0.9
2,266,703	+		BBR_RS19910	0.27	+0.1
2,266,705	+		BBR_RS19910	0.27	-1.2
2,266,705	+		BBR_RS19910	0.27	+1.5
2,266,706	-		BBR_RS19910	0.27	+2.0
2,266,709	+		BBR_RS19910	0.28	+3.0
2,266,711	+		BBR_RS19910	0.28	-0.3
2,266,711	+		BBR_RS19910	0.28	-1.4
2,266,711	-		BBR_RS19910	0.28	+0.2
2,266,711	-		BBR_RS19910	0.28	+1.1
2,266,713	+		BBR_RS19910	0.28	-1.2
2,266,713	+		BBR_RS19910	0.28	-1.9
2,266,713	+		BBR_RS19910	0.28	+1.4
2,266,713	+		BBR_RS19910	0.28	+0.2
2,266,713	+		BBR_RS19910	0.28	-0.1
2,266,713	+		BBR_RS19910	0.28	-0.9
2,266,713	+		BBR_RS19910	0.28	-2.2
2,266,713	+		BBR_RS19910	0.28	+0.3
2,266,713	+		BBR_RS19910	0.28	+0.6
2,266,713	+		BBR_RS19910	0.28	+0.8
2,266,713	+		BBR_RS19910	0.28	+2.9
2,266,713	+		BBR_RS19910	0.28	+1.2
2,266,713	+		BBR_RS19910	0.28	+0.1
2,266,713	+		BBR_RS19910	0.28	-1.6
2,266,713	+		BBR_RS19910	0.28	-0.7
2,266,713	+		BBR_RS19910	0.28	+0.0
2,266,713	+		BBR_RS19910	0.28	+0.5
2,266,713	+		BBR_RS19910	0.28	-1.2
2,266,713	+		BBR_RS19910	0.28	-1.6
2,266,713	+		BBR_RS19910	0.28	-0.1
2,266,713	+		BBR_RS19910	0.28	+1.1
2,266,713	+		BBR_RS19910	0.28	+0.0
2,266,713	+		BBR_RS19910	0.28	+0.3
2,266,719	-		BBR_RS19910	0.29	-0.6
2,266,721	-		BBR_RS19910	0.30	+1.1
2,266,721	-		BBR_RS19910	0.30	+2.4
2,266,721	-		BBR_RS19910	0.30	-0.0
2,266,721	-		BBR_RS19910	0.30	+1.1
2,266,721	-		BBR_RS19910	0.30	-1.1
2,266,721	-		BBR_RS19910	0.30	-0.6
2,266,721	-		BBR_RS19910	0.30	+0.7
2,266,721	-		BBR_RS19910	0.30	-0.3
2,266,721	-		BBR_RS19910	0.30	+1.2
2,266,721	-		BBR_RS19910	0.30	+2.1
2,266,721	-		BBR_RS19910	0.30	+0.4
2,266,721	-		BBR_RS19910	0.30	+1.4
2,266,721	-		BBR_RS19910	0.30	-1.3
2,266,721	-		BBR_RS19910	0.30	-0.7
2,266,721	-		BBR_RS19910	0.30	+1.6
2,266,721	-		BBR_RS19910	0.30	+2.1
2,266,721	-		BBR_RS19910	0.30	+0.6
2,266,721	-		BBR_RS19910	0.30	+0.3
2,266,721	-		BBR_RS19910	0.30	-0.6
2,266,721	-		BBR_RS19910	0.30	-0.3
2,266,721	-		BBR_RS19910	0.30	+0.1
2,266,721	-		BBR_RS19910	0.30	+2.4
2,266,721	-		BBR_RS19910	0.30	+1.3
2,266,736	+		BBR_RS19910	0.32	+2.3
2,266,741	+		BBR_RS19910	0.33	+1.8
2,266,744	-		BBR_RS19910	0.33	+0.7
2,266,744	-		BBR_RS19910	0.33	+2.5
2,266,751	+		BBR_RS19910	0.34	-0.2
2,266,751	+		BBR_RS19910	0.34	+2.0
2,266,751	+		BBR_RS19910	0.34	-0.4
2,266,751	+		BBR_RS19910	0.34	+2.2
2,266,751	+		BBR_RS19910	0.34	+0.8
2,266,751	+		BBR_RS19910	0.34	-1.1
2,266,751	+		BBR_RS19910	0.34	-0.2
2,266,759	-		BBR_RS19910	0.36	+2.6
2,266,759	-		BBR_RS19910	0.36	-2.5
2,266,759	-		BBR_RS19910	0.36	-0.2
2,266,766	-		BBR_RS19910	0.37	+2.3
2,266,766	-		BBR_RS19910	0.37	-0.3
2,266,766	-		BBR_RS19910	0.37	-1.6
2,266,771	-		BBR_RS19910	0.38	-1.0
2,266,786	+		BBR_RS19910	0.40	+1.1
2,266,794	-		BBR_RS19910	0.41	-0.2
2,266,794	-		BBR_RS19910	0.41	-2.6
2,266,795	-		BBR_RS19910	0.41	-1.8
2,266,827	-		BBR_RS19910	0.46	+2.3
2,266,827	-		BBR_RS19910	0.46	+1.0
2,266,829	+		BBR_RS19910	0.47	-1.2
2,266,880	+		BBR_RS19910	0.55	+1.4
2,266,880	+		BBR_RS19910	0.55	+0.9
2,266,909	+		BBR_RS19910	0.59	-1.5
2,266,917	-		BBR_RS19910	0.61	-0.6
2,266,917	-		BBR_RS19910	0.61	+1.6
2,266,932	-		BBR_RS19910	0.63	-0.1
2,266,933	+		BBR_RS19910	0.63	-0.6
2,266,941	-		BBR_RS19910	0.64	-0.3
2,266,944	-		BBR_RS19910	0.65	-2.4
2,266,946	+		BBR_RS19910	0.65	+2.1
2,266,946	+		BBR_RS19910	0.65	+1.0
2,266,953	+		BBR_RS19910	0.66	-2.3
2,266,953	+		BBR_RS19910	0.66	+1.0
2,266,954	-		BBR_RS19910	0.67	+1.3
2,266,954	-		BBR_RS19910	0.67	+1.1
2,266,954	-		BBR_RS19910	0.67	+1.9
2,266,961	-		BBR_RS19910	0.68	+0.9
2,266,979	-		BBR_RS19910	0.70	-1.0
2,266,991	-		BBR_RS19910	0.72	+0.6
2,266,992	-		BBR_RS19910	0.73	+2.0
2,267,038	+		BBR_RS19910	0.80	+0.5
2,267,091	+		BBR_RS19910	0.88	+0.5
2,267,130	-				+0.8
2,267,135	+				+2.5
2,267,144	+				+0.7
2,267,146	+				+1.1
2,267,146	+				+0.3
2,267,153	-				-1.4
2,267,226	+		BBR_RS21135	0.20	-2.2
2,267,247	+		BBR_RS21135	0.26	-1.5
2,267,247	+		BBR_RS21135	0.26	+2.1
2,267,247	+		BBR_RS21135	0.26	-1.1
2,267,247	+		BBR_RS21135	0.26	-1.8
2,267,247	+		BBR_RS21135	0.26	+1.2
2,267,255	-		BBR_RS21135	0.28	-0.1
2,267,255	-		BBR_RS21135	0.28	+0.8
2,267,255	-		BBR_RS21135	0.28	-0.2
2,267,255	-		BBR_RS21135	0.28	-0.2
2,267,255	-		BBR_RS21135	0.28	-2.1
2,267,264	+		BBR_RS21135	0.31	+0.9
2,267,309	-		BBR_RS21135	0.44	-0.6
2,267,312	+		BBR_RS21135	0.45	+1.3
2,267,313	-		BBR_RS21135	0.45	+0.1
2,267,320	-		BBR_RS21135	0.47	+1.6
2,267,320	-		BBR_RS21135	0.47	-1.5
2,267,320	-		BBR_RS21135	0.47	-0.9
2,267,388	+		BBR_RS21135	0.67	-0.4
2,267,448	+		BBR_RS21135	0.84	+1.6
2,267,448	+		BBR_RS21135	0.84	-0.3
2,267,448	+		BBR_RS21135	0.84	+0.2
2,267,453	+		BBR_RS21135	0.85	+1.5
2,267,455	+		BBR_RS21135	0.86	-1.9
2,267,456	-		BBR_RS21135	0.86	+0.5
2,267,456	-		BBR_RS21135	0.86	+0.4
2,267,456	-		BBR_RS21135	0.86	+1.1
2,267,461	-		BBR_RS21135	0.88	-0.3
2,267,461	-		BBR_RS21135	0.88	+0.8
2,267,461	-		BBR_RS21135	0.88	+0.1
2,267,474	+				+2.8
2,267,478	-				-1.5
2,267,482	-				+1.4
2,267,498	+				-0.2
2,267,517	+				+2.7
2,267,522	-				+0.7
2,267,523	-				-0.7
2,267,561	+				-0.7
2,267,561	+				-0.0
2,267,561	-				-1.4
2,267,619	+				+0.3
2,267,620	+				-0.8
2,267,621	+				-0.2
2,267,622	-				+0.8
2,267,627	-				-0.8
2,267,627	-				+0.9
2,267,635	+				-1.3
2,267,636	-				-1.4
2,267,697	+				+2.7
2,267,697	+				+1.8
2,267,721	+				-1.8
2,267,733	+		BBR_RS19915	0.11	-1.4
2,267,740	+		BBR_RS19915	0.11	+0.7
2,267,752	+		BBR_RS19915	0.13	-1.4
2,267,761	-		BBR_RS19915	0.14	+0.1
2,267,768	+		BBR_RS19915	0.14	-1.0
2,267,776	-		BBR_RS19915	0.15	-1.4
2,267,776	-		BBR_RS19915	0.15	-1.1
2,267,785	+		BBR_RS19915	0.16	-1.7
2,267,791	-		BBR_RS19915	0.16	+0.6
2,267,814	+		BBR_RS19915	0.19	+0.5
2,267,836	+		BBR_RS19915	0.21	+2.3
2,267,844	-		BBR_RS19915	0.22	+0.3
2,267,882	-		BBR_RS19915	0.25	+2.3
2,267,887	-		BBR_RS19915	0.26	+1.1
2,267,911	-		BBR_RS19915	0.28	+1.1
2,267,931	+		BBR_RS19915	0.30	+1.8
2,267,931	+		BBR_RS19915	0.30	-1.6
2,267,931	+		BBR_RS19915	0.30	+2.2
2,267,931	+		BBR_RS19915	0.30	+0.2
2,267,931	+		BBR_RS19915	0.30	-1.4
2,267,939	-		BBR_RS19915	0.31	+0.3
2,267,996	+		BBR_RS19915	0.37	+0.8
2,268,001	+		BBR_RS19915	0.37	+2.1
2,268,004	-		BBR_RS19915	0.37	-1.5
2,268,004	-		BBR_RS19915	0.37	+0.3
2,268,029	-		BBR_RS19915	0.40	-0.6
2,268,029	-		BBR_RS19915	0.40	-1.0
2,268,048	-		BBR_RS19915	0.42	+0.3
2,268,066	-		BBR_RS19915	0.43	+0.7
2,268,068	+		BBR_RS19915	0.44	+0.4
2,268,068	+		BBR_RS19915	0.44	+1.1
2,268,101	+		BBR_RS19915	0.47	-1.4
2,268,101	+		BBR_RS19915	0.47	-1.7
2,268,131	-		BBR_RS19915	0.50	-0.1
2,268,132	+		BBR_RS19915	0.50	+1.9
2,268,132	+		BBR_RS19915	0.50	-1.4
2,268,153	-		BBR_RS19915	0.52	-1.0
2,268,153	-		BBR_RS19915	0.52	-1.1
2,268,155	-		BBR_RS19915	0.52	-0.2
2,268,155	-		BBR_RS19915	0.52	+0.1
2,268,157	+		BBR_RS19915	0.52	+0.9
2,268,157	+		BBR_RS19915	0.52	+1.2