Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18480

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse17; day4
1,932,773	-		BBR_RS18475	0.75	-0.8
1,932,874	-		BBR_RS18475	0.78	-0.8
1,932,879	-		BBR_RS18475	0.78	+0.4
1,932,879	-		BBR_RS18475	0.78	+1.2
1,932,879	-		BBR_RS18475	0.78	-0.4
1,932,884	-		BBR_RS18475	0.79	+0.7
1,932,921	-		BBR_RS18475	0.80	-0.1
1,932,921	-		BBR_RS18475	0.80	-0.9
1,932,929	+		BBR_RS18475	0.80	-0.5
1,932,963	-		BBR_RS18475	0.81	-0.6
1,933,005	+		BBR_RS18475	0.82	-1.1
1,933,005	+		BBR_RS18475	0.82	-0.8
1,933,005	+		BBR_RS18475	0.82	-1.6
1,933,013	-		BBR_RS18475	0.83	-1.0
1,933,045	-		BBR_RS18475	0.84	+0.4
1,933,068	+		BBR_RS18475	0.84	+1.9
1,933,076	-		BBR_RS18475	0.85	+1.4
1,933,140	+		BBR_RS18475	0.87	+0.9
1,933,154	+		BBR_RS18475	0.87	+0.1
1,933,154	+		BBR_RS18475	0.87	+0.6
1,933,154	+		BBR_RS18475	0.87	+0.6
1,933,154	+		BBR_RS18475	0.87	-2.0
1,933,154	+		BBR_RS18475	0.87	-0.9
1,933,154	+		BBR_RS18475	0.87	-0.1
1,933,156	+		BBR_RS18475	0.87	-0.0
1,933,159	+		BBR_RS18475	0.87	+0.4
1,933,162	-		BBR_RS18475	0.87	-0.5
1,933,209	-		BBR_RS18475	0.89	-0.0
1,933,214	+		BBR_RS18475	0.89	+2.9
1,933,214	+		BBR_RS18475	0.89	-1.6
1,933,214	+		BBR_RS18475	0.89	+0.7
1,933,214	+		BBR_RS18475	0.89	+1.7
1,933,214	+		BBR_RS18475	0.89	-2.0
1,933,214	+		BBR_RS18475	0.89	+0.8
1,933,222	-		BBR_RS18475	0.89	+0.7
1,933,222	-		BBR_RS18475	0.89	+0.6
1,933,222	-		BBR_RS18475	0.89	+2.0
1,933,222	-		BBR_RS18475	0.89	+1.4
1,933,226	+		BBR_RS18475	0.90	+0.4
1,933,237	-		BBR_RS18475	0.90	+0.1
1,933,242	-				-0.2
1,933,246	-				-0.5
1,933,296	-				+0.7
1,933,316	+				+1.7
1,933,364	+				-2.2
1,933,367	-				-1.9
1,933,376	-				-0.9
1,933,397	+				-0.1
1,933,397	+				-0.5
1,933,402	+				+2.9
1,933,452	-				-2.2
1,933,470	+				-0.0
1,933,470	+				-0.0
1,933,470	+				+1.0
1,933,480	-				+0.9
1,933,519	+				+2.4
1,933,551	-				+2.9
1,933,556	-				-2.5
1,933,556	-				+2.4
1,933,556	-				-0.4
1,933,556	-				+1.9
1,933,633	+				+0.9
1,933,677	-				+0.1
1,933,680	+				+0.0
1,933,682	+				+1.4
1,933,682	+				-0.0
1,933,683	-				-0.9
1,933,683	-				+0.5
1,933,728	+				-1.1
1,933,728	+				+2.0
1,933,728	+				-2.2
1,933,728	+				-2.1
1,933,733	+				+1.1
1,933,733	+				-0.8
1,933,736	-				+0.8
1,933,766	+				-0.9
1,933,774	+				-0.2
1,933,779	+				-2.5
1,933,798	+				-0.5
1,933,810	+				+0.1
1,933,818	-				+1.7
1,933,847	-				+0.5
1,933,847	-				-0.4
1,933,885	+		BBR_RS18480	0.13	-2.1
1,933,885	+		BBR_RS18480	0.13	+0.5
1,933,920	+		BBR_RS18480	0.16	-1.8
1,933,922	+		BBR_RS18480	0.17	-1.5
1,933,922	+		BBR_RS18480	0.17	-1.4
1,933,928	-		BBR_RS18480	0.17	-0.7
1,933,928	-		BBR_RS18480	0.17	-0.8
1,933,928	-		BBR_RS18480	0.17	-1.4
1,933,978	-		BBR_RS18480	0.22	+0.6
1,933,978	-		BBR_RS18480	0.22	-1.1
1,934,047	-		BBR_RS18480	0.29	+1.0
1,934,056	-		BBR_RS18480	0.30	+1.3
1,934,140	-		BBR_RS18480	0.38	+1.7
1,934,141	-		BBR_RS18480	0.38	-1.5
1,934,145	-		BBR_RS18480	0.39	-2.3
1,934,145	-		BBR_RS18480	0.39	-1.3
1,934,162	+		BBR_RS18480	0.40	+0.1
1,934,162	+		BBR_RS18480	0.40	+0.6
1,934,169	+		BBR_RS18480	0.41	+2.9
1,934,170	-		BBR_RS18480	0.41	-2.7
1,934,170	-		BBR_RS18480	0.41	-2.0
1,934,259	+		BBR_RS18480	0.50	-0.2
1,934,269	-		BBR_RS18480	0.51	-1.7
1,934,300	-		BBR_RS18480	0.54	+1.0
1,934,302	-		BBR_RS18480	0.54	-0.7
1,934,309	+		BBR_RS18480	0.55	-1.2
1,934,333	+		BBR_RS18480	0.57	-1.6
1,934,360	+		BBR_RS18480	0.60	-0.9
1,934,368	+		BBR_RS18480	0.61	-0.4
1,934,375	+		BBR_RS18480	0.61	+2.1
1,934,375	+		BBR_RS18480	0.61	-0.3
1,934,375	+		BBR_RS18480	0.61	-1.9
1,934,376	-		BBR_RS18480	0.62	+1.0
1,934,378	-		BBR_RS18480	0.62	-1.4
1,934,383	-		BBR_RS18480	0.62	+0.8
1,934,383	-		BBR_RS18480	0.62	-1.5
1,934,383	-		BBR_RS18480	0.62	-0.8
1,934,383	-		BBR_RS18480	0.62	-1.0
1,934,409	+		BBR_RS18480	0.65	-0.7
1,934,411	+		BBR_RS18480	0.65	-2.7
1,934,419	-		BBR_RS18480	0.66	-0.9
1,934,419	-		BBR_RS18480	0.66	-2.0
1,934,419	-		BBR_RS18480	0.66	-1.7
1,934,427	-		BBR_RS18480	0.67	-1.2
1,934,427	-		BBR_RS18480	0.67	-1.3
1,934,441	-		BBR_RS18480	0.68	-1.3
1,934,499	+		BBR_RS18480	0.74	+2.1
1,934,501	+		BBR_RS18480	0.74	-0.1
1,934,509	-		BBR_RS18480	0.75	-0.6
1,934,509	-		BBR_RS18480	0.75	-1.6
1,934,509	-		BBR_RS18480	0.75	-1.4
1,934,534	+		BBR_RS18480	0.77	-0.2
1,934,553	-		BBR_RS18480	0.79	-1.0
1,934,562	-		BBR_RS18480	0.80	+2.6
1,934,563	-		BBR_RS18480	0.80	+0.0
1,934,563	-		BBR_RS18480	0.80	-1.8
1,934,563	-		BBR_RS18480	0.80	-0.5
1,934,630	+		BBR_RS18480	0.87	+1.5
1,934,651	+		BBR_RS18480	0.89	-1.6
1,934,682	-				-1.0
1,934,701	+				-1.8
1,934,720	+				-0.9
1,934,720	+				-0.5
1,934,727	+				-0.8
1,934,735	-				+0.6
1,934,855	+				+0.8
1,934,855	-				+0.2
1,934,863	-				-1.9
1,934,913	+		BBR_RS18485	0.34	-0.1
1,934,931	-		BBR_RS18485	0.43	+1.0
1,934,933	+		BBR_RS18485	0.44	+2.2
1,934,933	+		BBR_RS18485	0.44	+2.4
1,934,960	+		BBR_RS18485	0.58	+0.7
1,934,960	+		BBR_RS18485	0.58	-0.3
1,934,965	+		BBR_RS18485	0.61	-2.2
1,934,999	-		BBR_RS18485	0.78	+1.5
1,935,013	-		BBR_RS18485	0.85	-1.8
1,935,032	+				-0.3
1,935,033	-				+0.4
1,935,059	+				+0.3
1,935,085	-				+1.2
1,935,086	-				+0.9
1,935,086	-				+2.3
1,935,121	-				+0.3
1,935,141	+				-0.2
1,935,141	+				-0.4
1,935,149	-				-0.4
1,935,149	-				+1.1
1,935,149	-				-1.3
1,935,150	-				-0.4
1,935,150	-				-1.6
1,935,200	-				+0.6
1,935,214	+				+1.9
1,935,222	-				+1.2
1,935,237	+				+2.2
1,935,287	-				+0.8
1,935,289	+				-0.8
1,935,292	-				-0.2
1,935,322	-				-0.1
1,935,344	-				-0.3
1,935,347	+				+0.7
1,935,377	-				+1.1
1,935,388	-				-0.2
1,935,403	+		BBR_RS18490	0.10	-1.1
1,935,403	+		BBR_RS18490	0.10	+0.3
1,935,403	+		BBR_RS18490	0.10	-0.3
1,935,403	+		BBR_RS18490	0.10	-0.1
1,935,403	+		BBR_RS18490	0.10	+0.6
1,935,403	+		BBR_RS18490	0.10	-0.6
1,935,411	-		BBR_RS18490	0.11	-0.3
1,935,411	-		BBR_RS18490	0.11	+0.3
1,935,460	-		BBR_RS18490	0.14	-1.0
1,935,515	-		BBR_RS18490	0.19	-1.3
1,935,552	-		BBR_RS18490	0.21	-1.1
1,935,559	-		BBR_RS18490	0.22	+1.3
1,935,612	+		BBR_RS18490	0.26	-0.8
1,935,640	-		BBR_RS18490	0.28	-1.2
1,935,736	-		BBR_RS18490	0.35	+0.6
1,935,758	+		BBR_RS18490	0.37	+0.3