Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16340

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse17; day4
1,414,850	-		BBR_RS16335	0.71	+0.9
1,414,903	-		BBR_RS16335	0.73	-0.8
1,414,986	-		BBR_RS16335	0.76	-0.3
1,415,127	+		BBR_RS16335	0.81	-0.3
1,415,127	+		BBR_RS16335	0.81	-0.3
1,415,127	+		BBR_RS16335	0.81	-0.6
1,415,134	+		BBR_RS16335	0.81	-1.1
1,415,135	-		BBR_RS16335	0.81	-2.6
1,415,139	+		BBR_RS16335	0.82	+1.4
1,415,147	-		BBR_RS16335	0.82	-1.2
1,415,147	-		BBR_RS16335	0.82	-0.8
1,415,155	+		BBR_RS16335	0.82	+0.8
1,415,165	+		BBR_RS16335	0.83	+2.9
1,415,180	+		BBR_RS16335	0.83	+2.3
1,415,180	+		BBR_RS16335	0.83	+0.5
1,415,188	-		BBR_RS16335	0.83	-0.5
1,415,188	-		BBR_RS16335	0.83	-0.1
1,415,188	-		BBR_RS16335	0.83	+1.2
1,415,198	+		BBR_RS16335	0.84	+0.6
1,415,213	-		BBR_RS16335	0.84	-0.3
1,415,231	+		BBR_RS16335	0.85	-0.4
1,415,283	+		BBR_RS16335	0.87	+2.0
1,415,288	+		BBR_RS16335	0.87	+1.4
1,415,291	-		BBR_RS16335	0.87	+2.3
1,415,291	-		BBR_RS16335	0.87	-0.9
1,415,305	-		BBR_RS16335	0.88	-0.4
1,415,327	-		BBR_RS16335	0.88	+0.7
1,415,350	-		BBR_RS16335	0.89	-1.9
1,415,365	+		BBR_RS16335	0.90	+2.1
1,415,398	+				-0.4
1,415,398	+				+0.2
1,415,408	+				-1.2
1,415,440	+				+0.3
1,415,490	-				+0.1
1,415,492	+				+0.4
1,415,492	+				-0.0
1,415,567	+				+1.2
1,415,700	-				+2.8
1,415,705	-				-1.1
1,415,707	+				+2.4
1,415,715	-				+0.6
1,415,721	-				+0.1
1,415,730	-				+0.2
1,415,732	-				-0.9
1,415,735	-				+1.0
1,415,738	+				+0.7
1,415,746	+				+0.5
1,415,746	+				-0.1
1,415,769	-				+1.1
1,415,795	+				-0.0
1,415,803	+				-0.1
1,415,867	-				+1.3
1,415,915	-				+0.6
1,415,915	-				+0.1
1,415,935	-				-0.2
1,415,946	+				+0.4
1,415,977	-				+1.2
1,416,004	+		BBR_RS16340	0.11	-0.8
1,416,019	+		BBR_RS16340	0.12	-0.5
1,416,031	+		BBR_RS16340	0.12	+2.4
1,416,031	+		BBR_RS16340	0.12	+1.4
1,416,093	-		BBR_RS16340	0.15	+1.3
1,416,122	-		BBR_RS16340	0.16	-1.2
1,416,132	-		BBR_RS16340	0.16	-0.1
1,416,132	-		BBR_RS16340	0.16	-0.9
1,416,149	-		BBR_RS16340	0.17	-0.2
1,416,335	-		BBR_RS16340	0.24	+1.0
1,416,335	-		BBR_RS16340	0.24	-1.5
1,416,352	+		BBR_RS16340	0.25	+0.6
1,416,406	-		BBR_RS16340	0.27	-0.2
1,416,427	+		BBR_RS16340	0.28	+0.0
1,416,441	-		BBR_RS16340	0.29	-0.5
1,416,631	+		BBR_RS16340	0.36	-0.6
1,416,758	+		BBR_RS16340	0.41	-2.3
1,416,886	+		BBR_RS16340	0.46	+0.2
1,416,890	+		BBR_RS16340	0.47	-0.8
1,416,892	-		BBR_RS16340	0.47	+0.7
1,416,893	+		BBR_RS16340	0.47	+1.0
1,416,980	+		BBR_RS16340	0.50	+0.5
1,416,980	+		BBR_RS16340	0.50	+0.5
1,416,980	+		BBR_RS16340	0.50	-0.3
1,417,013	-		BBR_RS16340	0.52	-3.1
1,417,188	+		BBR_RS16340	0.59	-0.9
1,417,199	+		BBR_RS16340	0.59	+1.1
1,417,263	+		BBR_RS16340	0.62	+2.4
1,417,263	+		BBR_RS16340	0.62	+1.8
1,417,307	-		BBR_RS16340	0.63	-0.0
1,417,432	+		BBR_RS16340	0.68	+2.1
1,417,440	-		BBR_RS16340	0.69	-0.2
1,417,457	-		BBR_RS16340	0.69	-1.6
1,417,503	+		BBR_RS16340	0.71	-0.2
1,417,545	-		BBR_RS16340	0.73	+0.5
1,417,557	-		BBR_RS16340	0.73	+0.2
1,417,579	+		BBR_RS16340	0.74	+2.3
1,417,584	+		BBR_RS16340	0.74	-1.2
1,417,629	-		BBR_RS16340	0.76	-0.9
1,417,678	+		BBR_RS16340	0.78	-1.6
1,417,690	+		BBR_RS16340	0.79	+1.4
1,417,713	-		BBR_RS16340	0.80	-0.5
1,417,715	+		BBR_RS16340	0.80	-1.3
1,417,797	+		BBR_RS16340	0.83	+1.0
1,417,832	+		BBR_RS16340	0.84	-0.6
1,417,833	-		BBR_RS16340	0.84	+0.5
1,417,833	-		BBR_RS16340	0.84	+0.8
1,417,850	-		BBR_RS16340	0.85	+1.3
1,417,884	+		BBR_RS16340	0.87	-0.6
1,417,892	-		BBR_RS16340	0.87	-1.0
1,417,925	+		BBR_RS16340	0.88	+2.5
1,417,926	-		BBR_RS16340	0.88	+1.2
1,417,926	-		BBR_RS16340	0.88	+0.4
1,417,933	-		BBR_RS16340	0.89	-1.1
1,417,933	-		BBR_RS16340	0.89	+1.4
1,417,967	-		BBR_RS16340	0.90	+1.7
1,418,011	-				-1.9
1,418,013	+				-1.2
1,418,013	+				+0.9
1,418,013	+				-0.6
1,418,021	-				-0.2
1,418,025	+				-0.3
1,418,109	+				-1.2
1,418,203	+				-0.4
1,418,211	-				-0.1
1,418,214	+				+0.6
1,418,222	-				+1.4
1,418,236	-				-1.5
1,418,329	+				+1.4
1,418,337	-				-0.5
1,418,343	+				-1.5
1,418,351	-				-1.1
1,418,366	+				-0.0
1,418,375	+				+0.6
1,418,431	+				+0.5
1,418,462	+				-1.6
1,418,470	-				-0.7
1,418,470	-				-1.1
1,418,694	+		BBR_RS16345	0.15	-1.7
1,418,712	-		BBR_RS16345	0.17	-1.1
1,418,712	-		BBR_RS16345	0.17	-1.0
1,418,724	+		BBR_RS16345	0.18	+0.3
1,418,732	-		BBR_RS16345	0.18	+2.0
1,418,765	+		BBR_RS16345	0.21	-1.5
1,418,813	-		BBR_RS16345	0.25	-3.2
1,418,820	+		BBR_RS16345	0.25	+1.8
1,418,846	+		BBR_RS16345	0.27	+0.3
1,418,846	+		BBR_RS16345	0.27	-0.0
1,418,846	+		BBR_RS16345	0.27	-1.4
1,418,846	+		BBR_RS16345	0.27	-0.8
1,418,854	-		BBR_RS16345	0.28	-0.9
1,418,854	-		BBR_RS16345	0.28	-1.8
1,418,854	-		BBR_RS16345	0.28	-0.5
1,418,892	+		BBR_RS16345	0.31	+0.1
1,418,900	-		BBR_RS16345	0.31	-1.8
1,418,902	+		BBR_RS16345	0.31	-1.1
1,418,902	+		BBR_RS16345	0.31	-0.5
1,418,902	+		BBR_RS16345	0.31	-0.3
1,418,905	-		BBR_RS16345	0.32	-1.8
1,418,905	-		BBR_RS16345	0.32	-1.9
1,418,910	-		BBR_RS16345	0.32	-0.5
1,418,925	+		BBR_RS16345	0.33	+0.4
1,418,927	+		BBR_RS16345	0.33	-0.3
1,418,927	+		BBR_RS16345	0.33	-1.4
1,418,927	+		BBR_RS16345	0.33	+2.7
1,418,927	+		BBR_RS16345	0.33	-0.7
1,418,927	+		BBR_RS16345	0.33	+0.9
1,418,927	+		BBR_RS16345	0.33	-1.7
1,418,927	+		BBR_RS16345	0.33	-1.4
1,418,935	-		BBR_RS16345	0.34	-1.0
1,418,935	-		BBR_RS16345	0.34	-0.2
1,419,017	+		BBR_RS16345	0.40	+0.9
1,419,055	+		BBR_RS16345	0.43	-2.1
1,419,055	+		BBR_RS16345	0.43	+0.3
1,419,086	+		BBR_RS16345	0.46	+1.0
1,419,112	+		BBR_RS16345	0.48	-0.8
1,419,112	+		BBR_RS16345	0.48	-1.1
1,419,120	-		BBR_RS16345	0.48	-0.8
1,419,120	-		BBR_RS16345	0.48	-1.7
1,419,122	+		BBR_RS16345	0.49	+2.5
1,419,130	+		BBR_RS16345	0.49	-0.9
1,419,130	-		BBR_RS16345	0.49	-1.1
1,419,139	+		BBR_RS16345	0.50	-0.5
1,419,139	+		BBR_RS16345	0.50	-2.9
1,419,144	+		BBR_RS16345	0.50	-2.1
1,419,147	-		BBR_RS16345	0.50	-1.9
1,419,147	-		BBR_RS16345	0.50	-1.7
1,419,147	-		BBR_RS16345	0.50	-0.2
1,419,152	-		BBR_RS16345	0.51	-2.1
1,419,154	+		BBR_RS16345	0.51	-0.3
1,419,166	+		BBR_RS16345	0.52	-1.2