Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13960

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13955 and BBR_RS13960 are separated by 439 nucleotidesBBR_RS13960 and BBR_RS13965 are separated by 11 nucleotides BBR_RS13955: BBR_RS13955 - argininosuccinate lyase, at 907,969 to 909,441 _RS13955 BBR_RS13960: BBR_RS13960 - thiamine biosynthesis protein ThiS, at 909,881 to 910,075 _RS13960 BBR_RS13965: BBR_RS13965 - thiazole synthase, at 910,087 to 910,956 _RS13965 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1 2 3at 908.916 kb on + strand, within BBR_RS13955at 908.916 kb on + strand, within BBR_RS13955at 908.922 kb on + strand, within BBR_RS13955at 908.922 kb on + strand, within BBR_RS13955at 908.923 kb on + strand, within BBR_RS13955at 908.923 kb on + strand, within BBR_RS13955at 908.929 kb on + strand, within BBR_RS13955at 908.971 kb on - strand, within BBR_RS13955at 908.999 kb on - strand, within BBR_RS13955at 909.024 kb on + strand, within BBR_RS13955at 909.024 kb on + strand, within BBR_RS13955at 909.024 kb on + strand, within BBR_RS13955at 909.032 kb on - strand, within BBR_RS13955at 909.032 kb on - strand, within BBR_RS13955at 909.032 kb on - strand, within BBR_RS13955at 909.032 kb on - strand, within BBR_RS13955at 909.032 kb on - strand, within BBR_RS13955at 909.096 kb on - strand, within BBR_RS13955at 909.120 kb on - strand, within BBR_RS13955at 909.139 kb on + strand, within BBR_RS13955at 909.158 kb on - strand, within BBR_RS13955at 909.161 kb on + strand, within BBR_RS13955at 909.179 kb on + strand, within BBR_RS13955at 909.179 kb on + strand, within BBR_RS13955at 909.187 kb on + strand, within BBR_RS13955at 909.251 kb on + strand, within BBR_RS13955at 909.274 kb on - strand, within BBR_RS13955at 909.325 kb on + strandat 909.325 kb on + strandat 909.333 kb on - strandat 909.333 kb on - strandat 909.401 kb on + strandat 909.415 kb on + strandat 909.435 kb on + strandat 909.435 kb on + strandat 909.499 kb on + strandat 909.519 kb on + strandat 909.519 kb on + strandat 909.533 kb on - strandat 909.593 kb on - strandat 909.593 kb on - strandat 909.593 kb on - strandat 909.593 kb on - strandat 909.769 kb on + strandat 909.827 kb on + strandat 909.863 kb on - strandat 909.886 kb on + strandat 909.886 kb on + strandat 909.894 kb on - strandat 909.894 kb on - strandat 909.924 kb on + strand, within BBR_RS13960at 909.932 kb on - strand, within BBR_RS13960at 910.056 kb on + strandat 910.094 kb on + strandat 910.167 kb on + strandat 910.167 kb on + strandat 910.190 kb on - strand, within BBR_RS13965at 910.192 kb on + strand, within BBR_RS13965at 910.264 kb on + strand, within BBR_RS13965at 910.272 kb on - strand, within BBR_RS13965at 910.272 kb on - strand, within BBR_RS13965at 910.275 kb on + strand, within BBR_RS13965at 910.341 kb on - strand, within BBR_RS13965at 910.342 kb on + strand, within BBR_RS13965at 910.342 kb on + strand, within BBR_RS13965at 910.350 kb on - strand, within BBR_RS13965at 910.350 kb on - strand, within BBR_RS13965at 910.350 kb on - strand, within BBR_RS13965at 910.350 kb on - strand, within BBR_RS13965at 910.395 kb on - strand, within BBR_RS13965at 910.397 kb on - strand, within BBR_RS13965at 910.405 kb on - strand, within BBR_RS13965at 910.405 kb on - strand, within BBR_RS13965at 910.420 kb on - strand, within BBR_RS13965at 910.420 kb on - strand, within BBR_RS13965at 910.441 kb on - strand, within BBR_RS13965at 910.511 kb on - strand, within BBR_RS13965at 910.551 kb on - strand, within BBR_RS13965at 910.556 kb on - strand, within BBR_RS13965at 910.567 kb on - strand, within BBR_RS13965at 910.631 kb on + strand, within BBR_RS13965at 910.666 kb on - strand, within BBR_RS13965at 910.670 kb on - strand, within BBR_RS13965at 910.680 kb on + strand, within BBR_RS13965at 910.797 kb on + strand, within BBR_RS13965at 910.807 kb on + strand, within BBR_RS13965at 910.807 kb on + strand, within BBR_RS13965at 910.807 kb on + strand, within BBR_RS13965at 910.807 kb on + strand, within BBR_RS13965at 910.807 kb on + strand, within BBR_RS13965at 910.815 kb on - strand, within BBR_RS13965at 910.815 kb on - strand, within BBR_RS13965at 910.815 kb on - strand, within BBR_RS13965at 910.846 kb on - strand, within BBR_RS13965at 910.926 kb on - strandat 910.934 kb on - strandat 910.979 kb on + strandat 911.064 kb on + strandat 911.072 kb on - strandat 911.072 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse17; day4
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908,916 + BBR_RS13955 0.64 +1.3
908,916 + BBR_RS13955 0.64 +2.8
908,922 + BBR_RS13955 0.65 +0.6
908,922 + BBR_RS13955 0.65 -0.0
908,923 + BBR_RS13955 0.65 +0.3
908,923 + BBR_RS13955 0.65 +2.5
908,929 + BBR_RS13955 0.65 -1.1
908,971 - BBR_RS13955 0.68 -2.6
908,999 - BBR_RS13955 0.70 +1.3
909,024 + BBR_RS13955 0.72 -0.1
909,024 + BBR_RS13955 0.72 -1.2
909,024 + BBR_RS13955 0.72 -1.9
909,032 - BBR_RS13955 0.72 -2.6
909,032 - BBR_RS13955 0.72 +1.1
909,032 - BBR_RS13955 0.72 +1.4
909,032 - BBR_RS13955 0.72 -0.2
909,032 - BBR_RS13955 0.72 -2.3
909,096 - BBR_RS13955 0.77 -1.7
909,120 - BBR_RS13955 0.78 -2.0
909,139 + BBR_RS13955 0.79 +0.6
909,158 - BBR_RS13955 0.81 -1.5
909,161 + BBR_RS13955 0.81 +0.4
909,179 + BBR_RS13955 0.82 +0.9
909,179 + BBR_RS13955 0.82 -0.4
909,187 + BBR_RS13955 0.83 +2.3
909,251 + BBR_RS13955 0.87 -0.4
909,274 - BBR_RS13955 0.89 +0.0
909,325 + +0.2
909,325 + -0.4
909,333 - +2.2
909,333 - +0.1
909,401 + -1.5
909,415 + +1.6
909,435 + +0.2
909,435 + -2.1
909,499 + +2.5
909,519 + -1.8
909,519 + +1.7
909,533 - +0.3
909,593 - +1.5
909,593 - -1.3
909,593 - +0.8
909,593 - +0.2
909,769 + +0.3
909,827 + +0.6
909,863 - +2.8
909,886 + -0.4
909,886 + +0.5
909,894 - +0.3
909,894 - -0.7
909,924 + BBR_RS13960 0.22 -1.7
909,932 - BBR_RS13960 0.26 -0.7
910,056 + -0.3
910,094 + -1.4
910,167 + +0.7
910,167 + +0.8
910,190 - BBR_RS13965 0.12 -1.3
910,192 + BBR_RS13965 0.12 -0.3
910,264 + BBR_RS13965 0.20 +1.8
910,272 - BBR_RS13965 0.21 -1.0
910,272 - BBR_RS13965 0.21 +2.9
910,275 + BBR_RS13965 0.22 +1.5
910,341 - BBR_RS13965 0.29 +1.4
910,342 + BBR_RS13965 0.29 -1.3
910,342 + BBR_RS13965 0.29 -0.5
910,350 - BBR_RS13965 0.30 -0.7
910,350 - BBR_RS13965 0.30 +0.5
910,350 - BBR_RS13965 0.30 +1.0
910,350 - BBR_RS13965 0.30 -1.1
910,395 - BBR_RS13965 0.35 +2.2
910,397 - BBR_RS13965 0.36 +1.7
910,405 - BBR_RS13965 0.37 +0.5
910,405 - BBR_RS13965 0.37 +0.6
910,420 - BBR_RS13965 0.38 +0.2
910,420 - BBR_RS13965 0.38 +0.0
910,441 - BBR_RS13965 0.41 +0.7
910,511 - BBR_RS13965 0.49 +0.3
910,551 - BBR_RS13965 0.53 +0.8
910,556 - BBR_RS13965 0.54 +0.6
910,567 - BBR_RS13965 0.55 -0.2
910,631 + BBR_RS13965 0.63 +0.1
910,666 - BBR_RS13965 0.67 +0.5
910,670 - BBR_RS13965 0.67 +0.4
910,680 + BBR_RS13965 0.68 -1.0
910,797 + BBR_RS13965 0.82 -1.0
910,807 + BBR_RS13965 0.83 -0.7
910,807 + BBR_RS13965 0.83 -0.7
910,807 + BBR_RS13965 0.83 +2.2
910,807 + BBR_RS13965 0.83 +1.4
910,807 + BBR_RS13965 0.83 +2.6
910,815 - BBR_RS13965 0.84 +0.2
910,815 - BBR_RS13965 0.84 -0.8
910,815 - BBR_RS13965 0.84 +1.5
910,846 - BBR_RS13965 0.87 +0.6
910,926 - +0.1
910,934 - -0.1
910,979 + +2.2
911,064 + -0.3
911,072 - -0.9
911,072 - -1.7

Or see this region's nucleotide sequence