Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13080

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13070 and BBR_RS13075 are separated by 43 nucleotidesBBR_RS13075 and BBR_RS13080 overlap by 8 nucleotidesBBR_RS13080 and BBR_RS20745 overlap by 2 nucleotidesBBR_RS20745 and BBR_RS13085 are separated by 37 nucleotides BBR_RS13070: BBR_RS13070 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 705,151 to 707,043 _RS13070 BBR_RS13075: BBR_RS13075 - 23S rRNA pseudouridylate synthase, at 707,087 to 707,821 _RS13075 BBR_RS13080: BBR_RS13080 - LacI family DNA-binding transcriptional regulator, at 707,814 to 708,800 _RS13080 BBR_RS20745: BBR_RS20745 - hypothetical protein, at 708,799 to 709,002 _RS20745 BBR_RS13085: BBR_RS13085 - sugar ABC transporter permease, at 709,040 to 709,966 _RS13085 Position (kb) 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 707.058 kb on - strandat 707.098 kb on + strandat 707.098 kb on + strandat 707.098 kb on + strandat 707.108 kb on + strandat 707.123 kb on - strandat 707.188 kb on - strand, within BBR_RS13075at 707.202 kb on + strand, within BBR_RS13075at 707.202 kb on - strand, within BBR_RS13075at 707.210 kb on - strand, within BBR_RS13075at 707.225 kb on + strand, within BBR_RS13075at 707.263 kb on + strand, within BBR_RS13075at 707.266 kb on - strand, within BBR_RS13075at 707.322 kb on - strand, within BBR_RS13075at 707.407 kb on - strand, within BBR_RS13075at 707.439 kb on + strand, within BBR_RS13075at 707.538 kb on + strand, within BBR_RS13075at 707.571 kb on - strand, within BBR_RS13075at 707.573 kb on + strand, within BBR_RS13075at 707.574 kb on + strand, within BBR_RS13075at 707.582 kb on - strand, within BBR_RS13075at 707.604 kb on + strand, within BBR_RS13075at 707.653 kb on - strand, within BBR_RS13075at 707.655 kb on - strand, within BBR_RS13075at 707.660 kb on + strand, within BBR_RS13075at 707.668 kb on - strand, within BBR_RS13075at 707.668 kb on - strand, within BBR_RS13075at 707.775 kb on - strandat 707.777 kb on - strandat 707.807 kb on + strandat 707.807 kb on - strandat 707.817 kb on + strandat 707.857 kb on - strandat 707.893 kb on - strandat 707.919 kb on - strand, within BBR_RS13080at 707.919 kb on - strand, within BBR_RS13080at 707.957 kb on + strand, within BBR_RS13080at 707.983 kb on + strand, within BBR_RS13080at 708.075 kb on - strand, within BBR_RS13080at 708.075 kb on - strand, within BBR_RS13080at 708.082 kb on - strand, within BBR_RS13080at 708.107 kb on + strand, within BBR_RS13080at 708.166 kb on + strand, within BBR_RS13080at 708.167 kb on - strand, within BBR_RS13080at 708.208 kb on + strand, within BBR_RS13080at 708.239 kb on - strand, within BBR_RS13080at 708.239 kb on - strand, within BBR_RS13080at 708.239 kb on - strand, within BBR_RS13080at 708.277 kb on + strand, within BBR_RS13080at 708.279 kb on + strand, within BBR_RS13080at 708.279 kb on + strand, within BBR_RS13080at 708.287 kb on - strand, within BBR_RS13080at 708.287 kb on - strand, within BBR_RS13080at 708.456 kb on + strand, within BBR_RS13080at 708.464 kb on - strand, within BBR_RS13080at 708.495 kb on - strand, within BBR_RS13080at 708.511 kb on + strand, within BBR_RS13080at 708.511 kb on + strand, within BBR_RS13080at 708.511 kb on - strand, within BBR_RS13080at 708.554 kb on - strand, within BBR_RS13080at 708.653 kb on - strand, within BBR_RS13080at 708.676 kb on + strand, within BBR_RS13080at 708.753 kb on + strandat 708.753 kb on + strandat 708.789 kb on - strandat 708.831 kb on - strand, within BBR_RS20745at 708.934 kb on - strand, within BBR_RS20745at 708.936 kb on - strand, within BBR_RS20745at 708.961 kb on + strand, within BBR_RS20745at 709.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse17; day4
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707,058 - -0.6
707,098 + +0.4
707,098 + -0.0
707,098 + +0.7
707,108 + +0.7
707,123 - -0.5
707,188 - BBR_RS13075 0.14 +0.4
707,202 + BBR_RS13075 0.16 +0.1
707,202 - BBR_RS13075 0.16 +0.1
707,210 - BBR_RS13075 0.17 +1.8
707,225 + BBR_RS13075 0.19 +1.0
707,263 + BBR_RS13075 0.24 -1.7
707,266 - BBR_RS13075 0.24 +0.5
707,322 - BBR_RS13075 0.32 +0.2
707,407 - BBR_RS13075 0.44 +1.7
707,439 + BBR_RS13075 0.48 -0.2
707,538 + BBR_RS13075 0.61 +0.3
707,571 - BBR_RS13075 0.66 +0.7
707,573 + BBR_RS13075 0.66 -0.2
707,574 + BBR_RS13075 0.66 +0.8
707,582 - BBR_RS13075 0.67 +0.1
707,604 + BBR_RS13075 0.70 +0.2
707,653 - BBR_RS13075 0.77 +1.7
707,655 - BBR_RS13075 0.77 -0.2
707,660 + BBR_RS13075 0.78 +2.7
707,668 - BBR_RS13075 0.79 -0.7
707,668 - BBR_RS13075 0.79 -0.8
707,775 - +0.8
707,777 - +2.6
707,807 + +1.7
707,807 - +0.2
707,817 + -3.8
707,857 - -0.7
707,893 - -1.3
707,919 - BBR_RS13080 0.11 -1.7
707,919 - BBR_RS13080 0.11 -1.4
707,957 + BBR_RS13080 0.14 -0.9
707,983 + BBR_RS13080 0.17 -0.7
708,075 - BBR_RS13080 0.26 -2.0
708,075 - BBR_RS13080 0.26 -0.4
708,082 - BBR_RS13080 0.27 +0.4
708,107 + BBR_RS13080 0.30 -1.4
708,166 + BBR_RS13080 0.36 -2.1
708,167 - BBR_RS13080 0.36 -0.1
708,208 + BBR_RS13080 0.40 -0.7
708,239 - BBR_RS13080 0.43 -2.3
708,239 - BBR_RS13080 0.43 -0.4
708,239 - BBR_RS13080 0.43 -1.9
708,277 + BBR_RS13080 0.47 -1.7
708,279 + BBR_RS13080 0.47 -2.2
708,279 + BBR_RS13080 0.47 -1.2
708,287 - BBR_RS13080 0.48 -0.5
708,287 - BBR_RS13080 0.48 -0.1
708,456 + BBR_RS13080 0.65 -0.8
708,464 - BBR_RS13080 0.66 -1.1
708,495 - BBR_RS13080 0.69 -0.2
708,511 + BBR_RS13080 0.71 -1.4
708,511 + BBR_RS13080 0.71 -1.3
708,511 - BBR_RS13080 0.71 -0.4
708,554 - BBR_RS13080 0.75 -1.5
708,653 - BBR_RS13080 0.85 -0.9
708,676 + BBR_RS13080 0.87 -3.3
708,753 + -0.3
708,753 + -1.5
708,789 - -2.6
708,831 - BBR_RS20745 0.16 -0.8
708,934 - BBR_RS20745 0.66 +0.1
708,936 - BBR_RS20745 0.67 +1.4
708,961 + BBR_RS20745 0.79 +0.6
709,107 - +1.4

Or see this region's nucleotide sequence