Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32495 and AZOBR_RS32500 are separated by 12 nucleotides
AZOBR_RS32495: AZOBR_RS32495 - ferredoxin, at 656,526 to 657,281
_RS32495
AZOBR_RS32500: AZOBR_RS32500 - DMSO reductase, at 657,294 to 658,259
_RS32500
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 655.571 kb on + strand at 655.572 kb on - strand at 655.572 kb on - strand at 655.654 kb on + strand at 655.683 kb on + strand at 655.734 kb on + strand at 655.735 kb on - strand at 655.758 kb on + strand at 655.758 kb on + strand at 655.758 kb on + strand at 655.758 kb on + strand at 655.759 kb on - strand at 655.759 kb on - strand at 655.759 kb on - strand at 655.822 kb on + strand at 655.937 kb on - strand at 656.014 kb on + strand at 656.014 kb on + strand at 656.014 kb on + strand at 656.014 kb on + strand at 656.015 kb on - strand at 656.015 kb on - strand at 656.015 kb on - strand at 656.015 kb on - strand at 656.074 kb on + strand at 656.074 kb on + strand at 656.075 kb on - strand at 656.075 kb on - strand at 656.075 kb on - strand at 656.075 kb on - strand at 656.075 kb on - strand at 656.369 kb on - strand at 656.369 kb on - strand at 656.835 kb on + strand, within AZOBR_RS32495 at 656.836 kb on - strand, within AZOBR_RS32495 at 657.142 kb on - strand, within AZOBR_RS32495 at 657.160 kb on - strand, within AZOBR_RS32495 at 657.160 kb on - strand, within AZOBR_RS32495 at 657.160 kb on - strand, within AZOBR_RS32495 at 657.293 kb on + strand at 657.293 kb on + strand at 657.293 kb on + strand at 657.293 kb on + strand at 657.294 kb on - strand at 657.294 kb on - strand at 657.294 kb on - strand at 657.294 kb on - strand at 657.294 kb on - strand at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.705 kb on + strand, within AZOBR_RS32500 at 657.706 kb on - strand, within AZOBR_RS32500 at 657.706 kb on - strand, within AZOBR_RS32500 at 657.706 kb on - strand, within AZOBR_RS32500 at 657.706 kb on - strand, within AZOBR_RS32500 at 657.706 kb on - strand, within AZOBR_RS32500 at 657.759 kb on + strand, within AZOBR_RS32500 at 657.760 kb on - strand, within AZOBR_RS32500 at 658.003 kb on - strand, within AZOBR_RS32500 at 658.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 655,571 + +0.0 655,572 - -1.2 655,572 - -2.5 655,654 + +0.3 655,683 + -0.3 655,734 + -1.1 655,735 - -0.1 655,758 + -1.8 655,758 + +2.2 655,758 + -1.0 655,758 + -1.5 655,759 - +0.2 655,759 - -1.0 655,759 - -0.3 655,822 + +0.7 655,937 - +0.6 656,014 + +0.4 656,014 + -0.8 656,014 + +0.4 656,014 + +0.3 656,015 - +0.5 656,015 - -0.7 656,015 - -0.5 656,015 - -0.8 656,074 + +0.3 656,074 + +0.4 656,075 - +0.9 656,075 - -1.0 656,075 - +0.6 656,075 - -1.1 656,075 - -2.1 656,369 - -0.2 656,369 - -0.1 656,835 + AZOBR_RS32495 0.41 +3.1 656,836 - AZOBR_RS32495 0.41 -1.1 657,142 - AZOBR_RS32495 0.81 +1.0 657,160 - AZOBR_RS32495 0.84 -0.1 657,160 - AZOBR_RS32495 0.84 +0.6 657,160 - AZOBR_RS32495 0.84 -1.0 657,293 + -1.0 657,293 + +0.3 657,293 + -2.5 657,293 + +0.4 657,294 - +0.1 657,294 - -0.7 657,294 - -0.9 657,294 - -2.5 657,294 - +0.1 657,705 + AZOBR_RS32500 0.43 +0.1 657,705 + AZOBR_RS32500 0.43 +1.0 657,705 + AZOBR_RS32500 0.43 -1.7 657,705 + AZOBR_RS32500 0.43 +2.6 657,705 + AZOBR_RS32500 0.43 +0.8 657,705 + AZOBR_RS32500 0.43 +0.8 657,705 + AZOBR_RS32500 0.43 +0.3 657,705 + AZOBR_RS32500 0.43 -0.0 657,705 + AZOBR_RS32500 0.43 +0.9 657,706 - AZOBR_RS32500 0.43 -0.0 657,706 - AZOBR_RS32500 0.43 +2.6 657,706 - AZOBR_RS32500 0.43 +3.9 657,706 - AZOBR_RS32500 0.43 +1.3 657,706 - AZOBR_RS32500 0.43 +0.5 657,759 + AZOBR_RS32500 0.48 -1.2 657,760 - AZOBR_RS32500 0.48 -0.5 658,003 - AZOBR_RS32500 0.73 +0.8 658,240 - -3.2
Or see this region's nucleotide sequence