Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30820

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30815 and AZOBR_RS30820 are separated by 163 nucleotides AZOBR_RS30815: AZOBR_RS30815 - iron dicitrate transport regulator FecR, at 274,358 to 275,365 _RS30815 AZOBR_RS30820: AZOBR_RS30820 - TonB-dependent receptor, at 275,529 to 277,793 _RS30820 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2 3at 274.880 kb on + strand, within AZOBR_RS30815at 274.880 kb on + strand, within AZOBR_RS30815at 275.153 kb on + strand, within AZOBR_RS30815at 275.153 kb on + strand, within AZOBR_RS30815at 275.204 kb on + strand, within AZOBR_RS30815at 275.205 kb on - strand, within AZOBR_RS30815at 275.268 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.444 kb on - strandat 275.742 kb on + strandat 276.075 kb on + strand, within AZOBR_RS30820at 276.075 kb on + strand, within AZOBR_RS30820at 276.076 kb on - strand, within AZOBR_RS30820at 276.076 kb on - strand, within AZOBR_RS30820at 276.408 kb on + strand, within AZOBR_RS30820at 276.409 kb on - strand, within AZOBR_RS30820at 276.534 kb on + strand, within AZOBR_RS30820at 276.534 kb on + strand, within AZOBR_RS30820at 276.535 kb on - strand, within AZOBR_RS30820at 276.547 kb on - strand, within AZOBR_RS30820at 276.647 kb on + strand, within AZOBR_RS30820at 276.647 kb on + strand, within AZOBR_RS30820at 276.648 kb on - strand, within AZOBR_RS30820at 276.648 kb on - strand, within AZOBR_RS30820at 276.711 kb on + strand, within AZOBR_RS30820at 276.712 kb on + strand, within AZOBR_RS30820at 276.712 kb on - strand, within AZOBR_RS30820at 276.780 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.873 kb on + strand, within AZOBR_RS30820at 276.874 kb on - strand, within AZOBR_RS30820at 276.874 kb on - strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.155 kb on + strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.156 kb on - strand, within AZOBR_RS30820at 277.179 kb on + strand, within AZOBR_RS30820at 277.209 kb on + strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.210 kb on - strand, within AZOBR_RS30820at 277.372 kb on - strand, within AZOBR_RS30820at 277.462 kb on - strand, within AZOBR_RS30820at 277.564 kb on - strand, within AZOBR_RS30820at 277.714 kb on - strandat 277.714 kb on - strandat 277.746 kb on + strandat 277.746 kb on + strandat 277.875 kb on + strandat 277.893 kb on + strandat 278.358 kb on + strandat 278.375 kb on + strandat 278.607 kb on + strandat 278.607 kb on + strandat 278.608 kb on - strandat 278.610 kb on + strandat 278.610 kb on + strandat 278.610 kb on + strandat 278.611 kb on - strandat 278.688 kb on - strandat 278.689 kb on + strandat 278.707 kb on + strandat 278.707 kb on + strandat 278.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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274,880 + AZOBR_RS30815 0.52 -0.5
274,880 + AZOBR_RS30815 0.52 -0.6
275,153 + AZOBR_RS30815 0.79 -0.4
275,153 + AZOBR_RS30815 0.79 -0.0
275,204 + AZOBR_RS30815 0.84 -0.1
275,205 - AZOBR_RS30815 0.84 +0.7
275,268 - +0.7
275,444 - +0.6
275,444 - +0.9
275,444 - -0.6
275,444 - +1.6
275,444 - +0.1
275,742 + -1.6
276,075 + AZOBR_RS30820 0.24 +0.2
276,075 + AZOBR_RS30820 0.24 -0.2
276,076 - AZOBR_RS30820 0.24 +0.4
276,076 - AZOBR_RS30820 0.24 -2.1
276,408 + AZOBR_RS30820 0.39 +0.2
276,409 - AZOBR_RS30820 0.39 +0.6
276,534 + AZOBR_RS30820 0.44 +1.2
276,534 + AZOBR_RS30820 0.44 -0.9
276,535 - AZOBR_RS30820 0.44 +1.4
276,547 - AZOBR_RS30820 0.45 -0.3
276,647 + AZOBR_RS30820 0.49 +0.0
276,647 + AZOBR_RS30820 0.49 -1.2
276,648 - AZOBR_RS30820 0.49 +0.2
276,648 - AZOBR_RS30820 0.49 +0.6
276,711 + AZOBR_RS30820 0.52 +0.7
276,712 + AZOBR_RS30820 0.52 +0.3
276,712 - AZOBR_RS30820 0.52 +0.6
276,780 + AZOBR_RS30820 0.55 +1.4
276,873 + AZOBR_RS30820 0.59 -1.8
276,873 + AZOBR_RS30820 0.59 +1.2
276,873 + AZOBR_RS30820 0.59 +1.0
276,873 + AZOBR_RS30820 0.59 -0.5
276,873 + AZOBR_RS30820 0.59 -0.8
276,874 - AZOBR_RS30820 0.59 -0.7
276,874 - AZOBR_RS30820 0.59 +0.0
277,155 + AZOBR_RS30820 0.72 +1.0
277,155 + AZOBR_RS30820 0.72 -1.2
277,155 + AZOBR_RS30820 0.72 -0.9
277,156 - AZOBR_RS30820 0.72 +0.0
277,156 - AZOBR_RS30820 0.72 +0.3
277,156 - AZOBR_RS30820 0.72 +0.6
277,156 - AZOBR_RS30820 0.72 +0.6
277,179 + AZOBR_RS30820 0.73 -1.5
277,209 + AZOBR_RS30820 0.74 -0.5
277,210 - AZOBR_RS30820 0.74 +0.1
277,210 - AZOBR_RS30820 0.74 +2.6
277,210 - AZOBR_RS30820 0.74 +0.4
277,372 - AZOBR_RS30820 0.81 -0.4
277,462 - AZOBR_RS30820 0.85 +2.8
277,564 - AZOBR_RS30820 0.90 +0.3
277,714 - -0.1
277,714 - +0.3
277,746 + +0.9
277,746 + +0.2
277,875 + +1.0
277,893 + -0.2
278,358 + +0.0
278,375 + +1.0
278,607 + -1.2
278,607 + -2.2
278,608 - -0.6
278,610 + +0.9
278,610 + +0.3
278,610 + +0.3
278,611 - +2.6
278,688 - -0.8
278,689 + -0.3
278,707 + -1.8
278,707 + -0.2
278,708 - -1.9

Or see this region's nucleotide sequence