Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30385 and AZOBR_RS30390 are separated by 13 nucleotides AZOBR_RS30390 and AZOBR_RS30395 are separated by 21 nucleotides
AZOBR_RS30385: AZOBR_RS30385 - Fis family transcriptional regulator, at 162,291 to 163,634
_RS30385
AZOBR_RS30390: AZOBR_RS30390 - aspartate aminotransferase, at 163,648 to 165,279
_RS30390
AZOBR_RS30395: AZOBR_RS30395 - transporter, at 165,301 to 166,989
_RS30395
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.188 kb on + strand, within AZOBR_RS30385 at 163.188 kb on + strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.581 kb on + strand at 163.581 kb on + strand at 163.581 kb on + strand at 163.582 kb on - strand at 163.763 kb on + strand at 163.908 kb on - strand, within AZOBR_RS30390 at 163.908 kb on - strand, within AZOBR_RS30390 at 163.908 kb on - strand, within AZOBR_RS30390 at 163.919 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.959 kb on - strand, within AZOBR_RS30390 at 163.959 kb on - strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 164.058 kb on - strand, within AZOBR_RS30390 at 164.220 kb on - strand, within AZOBR_RS30390 at 164.333 kb on + strand, within AZOBR_RS30390 at 164.348 kb on + strand, within AZOBR_RS30390 at 164.415 kb on - strand, within AZOBR_RS30390 at 164.634 kb on - strand, within AZOBR_RS30390 at 164.660 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.741 kb on + strand, within AZOBR_RS30390 at 164.742 kb on - strand, within AZOBR_RS30390 at 164.742 kb on - strand, within AZOBR_RS30390 at 164.828 kb on + strand, within AZOBR_RS30390 at 164.829 kb on - strand, within AZOBR_RS30390 at 164.829 kb on - strand, within AZOBR_RS30390 at 164.829 kb on - strand, within AZOBR_RS30390 at 164.879 kb on + strand, within AZOBR_RS30390 at 164.879 kb on + strand, within AZOBR_RS30390 at 164.879 kb on + strand, within AZOBR_RS30390 at 164.954 kb on + strand, within AZOBR_RS30390 at 164.955 kb on - strand, within AZOBR_RS30390 at 164.955 kb on - strand, within AZOBR_RS30390 at 165.011 kb on + strand, within AZOBR_RS30390 at 165.011 kb on + strand, within AZOBR_RS30390 at 165.074 kb on + strand, within AZOBR_RS30390 at 165.074 kb on + strand, within AZOBR_RS30390 at 165.074 kb on + strand, within AZOBR_RS30390 at 165.074 kb on + strand, within AZOBR_RS30390 at 165.074 kb on + strand, within AZOBR_RS30390 at 165.075 kb on - strand, within AZOBR_RS30390 at 165.263 kb on + strand at 165.359 kb on + strand at 165.359 kb on + strand at 165.491 kb on + strand, within AZOBR_RS30395 at 165.701 kb on + strand, within AZOBR_RS30395 at 165.824 kb on + strand, within AZOBR_RS30395 at 165.824 kb on + strand, within AZOBR_RS30395 at 165.825 kb on - strand, within AZOBR_RS30395 at 165.825 kb on - strand, within AZOBR_RS30395 at 165.825 kb on - strand, within AZOBR_RS30395 at 165.825 kb on - strand, within AZOBR_RS30395 at 165.905 kb on + strand, within AZOBR_RS30395 at 165.905 kb on + strand, within AZOBR_RS30395 at 165.906 kb on - strand, within AZOBR_RS30395 at 165.989 kb on + strand, within AZOBR_RS30395 at 165.989 kb on + strand, within AZOBR_RS30395 at 165.989 kb on + strand, within AZOBR_RS30395 at 165.990 kb on - strand, within AZOBR_RS30395 at 166.001 kb on + strand, within AZOBR_RS30395 at 166.002 kb on - strand, within AZOBR_RS30395
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 163,188 + AZOBR_RS30385 0.67 -0.0 163,188 + AZOBR_RS30385 0.67 -0.1 163,189 - AZOBR_RS30385 0.67 -1.3 163,189 - AZOBR_RS30385 0.67 +0.0 163,189 - AZOBR_RS30385 0.67 -1.6 163,581 + -0.3 163,581 + -0.4 163,581 + +0.6 163,582 - +0.6 163,763 + -3.1 163,908 - AZOBR_RS30390 0.16 -0.0 163,908 - AZOBR_RS30390 0.16 -1.1 163,908 - AZOBR_RS30390 0.16 +0.3 163,919 + AZOBR_RS30390 0.17 -1.5 163,958 + AZOBR_RS30390 0.19 -0.0 163,958 + AZOBR_RS30390 0.19 -1.9 163,958 + AZOBR_RS30390 0.19 -0.7 163,958 + AZOBR_RS30390 0.19 +0.7 163,959 - AZOBR_RS30390 0.19 +0.1 163,959 - AZOBR_RS30390 0.19 -1.3 163,961 + AZOBR_RS30390 0.19 +1.6 163,961 + AZOBR_RS30390 0.19 -1.3 163,961 + AZOBR_RS30390 0.19 +1.3 163,961 + AZOBR_RS30390 0.19 -2.0 163,962 - AZOBR_RS30390 0.19 +1.1 163,962 - AZOBR_RS30390 0.19 -1.1 163,962 - AZOBR_RS30390 0.19 -0.2 164,058 - AZOBR_RS30390 0.25 +0.7 164,220 - AZOBR_RS30390 0.35 +0.2 164,333 + AZOBR_RS30390 0.42 +1.0 164,348 + AZOBR_RS30390 0.43 -0.6 164,415 - AZOBR_RS30390 0.47 -2.9 164,634 - AZOBR_RS30390 0.60 -1.0 164,660 + AZOBR_RS30390 0.62 +0.7 164,741 + AZOBR_RS30390 0.67 -1.0 164,741 + AZOBR_RS30390 0.67 +1.4 164,741 + AZOBR_RS30390 0.67 -0.1 164,741 + AZOBR_RS30390 0.67 +0.7 164,741 + AZOBR_RS30390 0.67 -1.6 164,741 + AZOBR_RS30390 0.67 +1.3 164,741 + AZOBR_RS30390 0.67 +0.7 164,742 - AZOBR_RS30390 0.67 -0.6 164,742 - AZOBR_RS30390 0.67 +0.2 164,828 + AZOBR_RS30390 0.72 -1.4 164,829 - AZOBR_RS30390 0.72 -0.0 164,829 - AZOBR_RS30390 0.72 +0.3 164,829 - AZOBR_RS30390 0.72 -1.1 164,879 + AZOBR_RS30390 0.75 -0.7 164,879 + AZOBR_RS30390 0.75 -0.1 164,879 + AZOBR_RS30390 0.75 -0.4 164,954 + AZOBR_RS30390 0.80 -1.2 164,955 - AZOBR_RS30390 0.80 +1.3 164,955 - AZOBR_RS30390 0.80 -0.4 165,011 + AZOBR_RS30390 0.84 -0.4 165,011 + AZOBR_RS30390 0.84 -0.8 165,074 + AZOBR_RS30390 0.87 +0.7 165,074 + AZOBR_RS30390 0.87 -1.2 165,074 + AZOBR_RS30390 0.87 +2.9 165,074 + AZOBR_RS30390 0.87 +0.2 165,074 + AZOBR_RS30390 0.87 +0.1 165,075 - AZOBR_RS30390 0.87 +0.2 165,263 + -0.3 165,359 + -0.5 165,359 + -1.1 165,491 + AZOBR_RS30395 0.11 +0.5 165,701 + AZOBR_RS30395 0.24 +0.4 165,824 + AZOBR_RS30395 0.31 -0.3 165,824 + AZOBR_RS30395 0.31 -0.7 165,825 - AZOBR_RS30395 0.31 -0.4 165,825 - AZOBR_RS30395 0.31 +2.1 165,825 - AZOBR_RS30395 0.31 +0.8 165,825 - AZOBR_RS30395 0.31 -0.8 165,905 + AZOBR_RS30395 0.36 +0.7 165,905 + AZOBR_RS30395 0.36 -2.0 165,906 - AZOBR_RS30395 0.36 +0.1 165,989 + AZOBR_RS30395 0.41 -0.4 165,989 + AZOBR_RS30395 0.41 +0.5 165,989 + AZOBR_RS30395 0.41 +2.6 165,990 - AZOBR_RS30395 0.41 -0.8 166,001 + AZOBR_RS30395 0.41 +0.2 166,002 - AZOBR_RS30395 0.42 -0.1
Or see this region's nucleotide sequence