Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30380 and AZOBR_RS30385 are separated by 10 nucleotides AZOBR_RS30385 and AZOBR_RS30390 are separated by 13 nucleotides
AZOBR_RS30380: AZOBR_RS30380 - histidine kinase, at 161,564 to 162,280
_RS30380
AZOBR_RS30385: AZOBR_RS30385 - Fis family transcriptional regulator, at 162,291 to 163,634
_RS30385
AZOBR_RS30390: AZOBR_RS30390 - aspartate aminotransferase, at 163,648 to 165,279
_RS30390
Position (kb) 162
163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 161.673 kb on - strand, within AZOBR_RS30380 at 162.188 kb on + strand, within AZOBR_RS30380 at 162.189 kb on - strand, within AZOBR_RS30380 at 162.189 kb on - strand, within AZOBR_RS30380 at 162.577 kb on - strand, within AZOBR_RS30385 at 163.188 kb on + strand, within AZOBR_RS30385 at 163.188 kb on + strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.189 kb on - strand, within AZOBR_RS30385 at 163.581 kb on + strand at 163.581 kb on + strand at 163.581 kb on + strand at 163.582 kb on - strand at 163.763 kb on + strand at 163.908 kb on - strand, within AZOBR_RS30390 at 163.908 kb on - strand, within AZOBR_RS30390 at 163.908 kb on - strand, within AZOBR_RS30390 at 163.919 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.958 kb on + strand, within AZOBR_RS30390 at 163.959 kb on - strand, within AZOBR_RS30390 at 163.959 kb on - strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.961 kb on + strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 163.962 kb on - strand, within AZOBR_RS30390 at 164.058 kb on - strand, within AZOBR_RS30390 at 164.220 kb on - strand, within AZOBR_RS30390 at 164.333 kb on + strand, within AZOBR_RS30390 at 164.348 kb on + strand, within AZOBR_RS30390 at 164.415 kb on - strand, within AZOBR_RS30390 at 164.634 kb on - strand, within AZOBR_RS30390
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 161,673 - AZOBR_RS30380 0.15 +2.2 162,188 + AZOBR_RS30380 0.87 +0.6 162,189 - AZOBR_RS30380 0.87 -0.2 162,189 - AZOBR_RS30380 0.87 -0.9 162,577 - AZOBR_RS30385 0.21 -0.9 163,188 + AZOBR_RS30385 0.67 -0.0 163,188 + AZOBR_RS30385 0.67 -0.1 163,189 - AZOBR_RS30385 0.67 -1.3 163,189 - AZOBR_RS30385 0.67 +0.0 163,189 - AZOBR_RS30385 0.67 -1.6 163,581 + -0.3 163,581 + -0.4 163,581 + +0.6 163,582 - +0.6 163,763 + -3.1 163,908 - AZOBR_RS30390 0.16 -0.0 163,908 - AZOBR_RS30390 0.16 -1.1 163,908 - AZOBR_RS30390 0.16 +0.3 163,919 + AZOBR_RS30390 0.17 -1.5 163,958 + AZOBR_RS30390 0.19 -0.0 163,958 + AZOBR_RS30390 0.19 -1.9 163,958 + AZOBR_RS30390 0.19 -0.7 163,958 + AZOBR_RS30390 0.19 +0.7 163,959 - AZOBR_RS30390 0.19 +0.1 163,959 - AZOBR_RS30390 0.19 -1.3 163,961 + AZOBR_RS30390 0.19 +1.6 163,961 + AZOBR_RS30390 0.19 -1.3 163,961 + AZOBR_RS30390 0.19 +1.3 163,961 + AZOBR_RS30390 0.19 -2.0 163,962 - AZOBR_RS30390 0.19 +1.1 163,962 - AZOBR_RS30390 0.19 -1.1 163,962 - AZOBR_RS30390 0.19 -0.2 164,058 - AZOBR_RS30390 0.25 +0.7 164,220 - AZOBR_RS30390 0.35 +0.2 164,333 + AZOBR_RS30390 0.42 +1.0 164,348 + AZOBR_RS30390 0.43 -0.6 164,415 - AZOBR_RS30390 0.47 -2.9 164,634 - AZOBR_RS30390 0.60 -1.0
Or see this region's nucleotide sequence