Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29835 and AZOBR_RS29840 are separated by 1 nucleotides AZOBR_RS29840 and AZOBR_RS29845 are separated by 287 nucleotides
AZOBR_RS29835: AZOBR_RS29835 - sulfite oxidase, at 41,202 to 41,843
_RS29835
AZOBR_RS29840: AZOBR_RS29840 - sulfoxide reductase catalytic subunit YedY, at 41,845 to 42,792
_RS29840
AZOBR_RS29845: AZOBR_RS29845 - oxidoreductase, at 43,080 to 44,108
_RS29845
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.249 kb on + strand at 41.249 kb on + strand at 41.250 kb on - strand at 41.329 kb on + strand, within AZOBR_RS29835 at 41.329 kb on + strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.330 kb on - strand, within AZOBR_RS29835 at 41.476 kb on + strand, within AZOBR_RS29835 at 41.477 kb on - strand, within AZOBR_RS29835 at 41.539 kb on + strand, within AZOBR_RS29835 at 41.540 kb on - strand, within AZOBR_RS29835 at 41.540 kb on - strand, within AZOBR_RS29835 at 41.563 kb on + strand, within AZOBR_RS29835 at 41.563 kb on + strand, within AZOBR_RS29835 at 41.849 kb on + strand at 41.849 kb on + strand at 41.876 kb on + strand at 42.002 kb on + strand, within AZOBR_RS29840 at 42.002 kb on + strand, within AZOBR_RS29840 at 42.012 kb on - strand, within AZOBR_RS29840 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.399 kb on - strand, within AZOBR_RS29840 at 42.848 kb on + strand at 42.848 kb on + strand at 42.849 kb on - strand at 42.849 kb on - strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.073 kb on - strand at 43.073 kb on - strand at 43.546 kb on + strand, within AZOBR_RS29845 at 43.546 kb on + strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 41,249 + -0.6 41,249 + +0.1 41,250 - -2.7 41,329 + AZOBR_RS29835 0.20 +1.1 41,329 + AZOBR_RS29835 0.20 -1.8 41,330 - AZOBR_RS29835 0.20 +2.6 41,330 - AZOBR_RS29835 0.20 +0.2 41,330 - AZOBR_RS29835 0.20 -0.0 41,330 - AZOBR_RS29835 0.20 -1.3 41,330 - AZOBR_RS29835 0.20 +0.4 41,476 + AZOBR_RS29835 0.43 -2.0 41,477 - AZOBR_RS29835 0.43 +1.6 41,539 + AZOBR_RS29835 0.52 -0.4 41,540 - AZOBR_RS29835 0.53 +0.0 41,540 - AZOBR_RS29835 0.53 +0.4 41,563 + AZOBR_RS29835 0.56 +0.1 41,563 + AZOBR_RS29835 0.56 +0.2 41,849 + +0.2 41,849 + +0.9 41,876 + +0.7 42,002 + AZOBR_RS29840 0.17 +1.3 42,002 + AZOBR_RS29840 0.17 -1.3 42,012 - AZOBR_RS29840 0.18 +2.1 42,102 - AZOBR_RS29840 0.27 -0.6 42,102 - AZOBR_RS29840 0.27 -1.1 42,161 + AZOBR_RS29840 0.33 +0.9 42,161 + AZOBR_RS29840 0.33 -0.4 42,161 + AZOBR_RS29840 0.33 -0.8 42,161 + AZOBR_RS29840 0.33 -2.0 42,161 + AZOBR_RS29840 0.33 -1.5 42,296 + AZOBR_RS29840 0.48 +0.3 42,296 + AZOBR_RS29840 0.48 -0.2 42,296 + AZOBR_RS29840 0.48 -0.6 42,297 - AZOBR_RS29840 0.48 -1.2 42,297 - AZOBR_RS29840 0.48 -1.5 42,297 - AZOBR_RS29840 0.48 -0.1 42,399 - AZOBR_RS29840 0.58 -0.5 42,848 + -0.6 42,848 + -0.9 42,849 - +0.4 42,849 - -1.2 43,072 + +0.3 43,072 + +0.8 43,072 + +0.9 43,072 + -0.5 43,073 - +0.1 43,073 - +1.7 43,546 + AZOBR_RS29845 0.45 +0.0 43,546 + AZOBR_RS29845 0.45 -0.6 43,547 - AZOBR_RS29845 0.45 -0.1 43,547 - AZOBR_RS29845 0.45 +0.0 43,547 - AZOBR_RS29845 0.45 -1.5 43,547 - AZOBR_RS29845 0.45 -2.1 43,627 + AZOBR_RS29845 0.53 -0.1 43,627 + AZOBR_RS29845 0.53 -0.3 43,628 - AZOBR_RS29845 0.53 +0.7 43,628 - AZOBR_RS29845 0.53 -1.6 43,630 + AZOBR_RS29845 0.53 -2.2 43,630 + AZOBR_RS29845 0.53 -1.8 43,631 - AZOBR_RS29845 0.54 -0.5 43,631 - AZOBR_RS29845 0.54 +1.2 43,631 - AZOBR_RS29845 0.54 -0.4
Or see this region's nucleotide sequence