Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29675 and AZOBR_RS29680 overlap by 4 nucleotides AZOBR_RS29680 and AZOBR_RS29685 overlap by 14 nucleotides AZOBR_RS29685 and AZOBR_RS29690 are separated by 21 nucleotides
AZOBR_RS29675: AZOBR_RS29675 - ABC transporter permease, at 6,669 to 7,706
_RS29675
AZOBR_RS29680: AZOBR_RS29680 - ABC transporter ATP-binding protein, at 7,703 to 8,521
_RS29680
AZOBR_RS29685: AZOBR_RS29685 - amino acid ABC transporter ATPase, at 8,508 to 9,212
_RS29685
AZOBR_RS29690: AZOBR_RS29690 - carbon monoxide dehydrogenase, at 9,234 to 11,603
_RS29690
Position (kb) 8
9
10 Strain fitness (log2 ratio) -2
-1
0
1 at 7.572 kb on + strand, within AZOBR_RS29675 at 8.486 kb on + strand at 8.487 kb on - strand at 8.487 kb on - strand at 8.512 kb on + strand at 8.513 kb on - strand at 8.812 kb on - strand, within AZOBR_RS29685 at 9.090 kb on + strand, within AZOBR_RS29685 at 9.091 kb on - strand, within AZOBR_RS29685 at 9.091 kb on - strand, within AZOBR_RS29685 at 9.120 kb on + strand, within AZOBR_RS29685 at 9.120 kb on + strand, within AZOBR_RS29685 at 9.198 kb on + strand at 9.211 kb on - strand at 9.245 kb on + strand at 9.730 kb on + strand, within AZOBR_RS29690 at 9.937 kb on + strand, within AZOBR_RS29690 at 9.937 kb on + strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 9.938 kb on - strand, within AZOBR_RS29690 at 10.125 kb on + strand, within AZOBR_RS29690
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 7,572 + AZOBR_RS29675 0.87 -1.5 8,486 + +0.4 8,487 - -0.9 8,487 - +0.3 8,512 + -0.6 8,513 - -1.1 8,812 - AZOBR_RS29685 0.43 +0.4 9,090 + AZOBR_RS29685 0.83 -1.1 9,091 - AZOBR_RS29685 0.83 +0.1 9,091 - AZOBR_RS29685 0.83 -2.3 9,120 + AZOBR_RS29685 0.87 -0.6 9,120 + AZOBR_RS29685 0.87 +0.3 9,198 + -1.8 9,211 - -0.1 9,245 + +0.1 9,730 + AZOBR_RS29690 0.21 +0.8 9,937 + AZOBR_RS29690 0.30 +0.3 9,937 + AZOBR_RS29690 0.30 +0.1 9,938 - AZOBR_RS29690 0.30 +0.2 9,938 - AZOBR_RS29690 0.30 -0.6 9,938 - AZOBR_RS29690 0.30 -0.0 10,125 + AZOBR_RS29690 0.38 -2.6
Or see this region's nucleotide sequence