Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27765 and AZOBR_RS27770 overlap by 4 nucleotides AZOBR_RS27770 and AZOBR_RS27775 are separated by 487 nucleotides
AZOBR_RS27765: AZOBR_RS27765 - hypothetical protein, at 395,544 to 396,509
_RS27765
AZOBR_RS27770: AZOBR_RS27770 - hypothetical protein, at 396,506 to 398,569
_RS27770
AZOBR_RS27775: AZOBR_RS27775 - sensor protein (fragment), at 399,057 to 400,811
_RS27775
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 395.773 kb on + strand, within AZOBR_RS27765 at 395.774 kb on - strand, within AZOBR_RS27765 at 395.774 kb on - strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.172 kb on + strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.173 kb on - strand, within AZOBR_RS27765 at 396.493 kb on + strand at 396.493 kb on + strand at 396.660 kb on + strand at 396.798 kb on + strand, within AZOBR_RS27770 at 396.799 kb on - strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.870 kb on + strand, within AZOBR_RS27770 at 396.871 kb on - strand, within AZOBR_RS27770 at 396.871 kb on - strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.984 kb on + strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 396.985 kb on - strand, within AZOBR_RS27770 at 397.480 kb on - strand, within AZOBR_RS27770 at 397.617 kb on + strand, within AZOBR_RS27770 at 397.617 kb on + strand, within AZOBR_RS27770 at 397.618 kb on - strand, within AZOBR_RS27770 at 397.744 kb on - strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.758 kb on + strand, within AZOBR_RS27770 at 397.759 kb on - strand, within AZOBR_RS27770 at 397.759 kb on - strand, within AZOBR_RS27770 at 397.776 kb on + strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 397.777 kb on - strand, within AZOBR_RS27770 at 398.442 kb on + strand at 398.442 kb on + strand at 398.442 kb on + strand at 398.443 kb on - strand at 398.586 kb on + strand at 398.587 kb on - strand at 398.587 kb on - strand at 398.684 kb on - strand at 398.684 kb on - strand at 398.872 kb on + strand at 398.872 kb on + strand at 398.873 kb on - strand at 398.878 kb on - strand at 398.878 kb on - strand at 398.901 kb on + strand at 398.902 kb on - strand at 398.923 kb on + strand at 398.931 kb on + strand at 398.932 kb on - strand at 399.016 kb on - strand at 399.016 kb on - strand at 399.042 kb on + strand at 399.042 kb on + strand at 399.042 kb on + strand at 399.043 kb on - strand at 399.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 395,773 + AZOBR_RS27765 0.24 -0.0 395,774 - AZOBR_RS27765 0.24 +0.8 395,774 - AZOBR_RS27765 0.24 +0.4 396,172 + AZOBR_RS27765 0.65 -0.2 396,172 + AZOBR_RS27765 0.65 -2.0 396,172 + AZOBR_RS27765 0.65 +1.1 396,173 - AZOBR_RS27765 0.65 -0.4 396,173 - AZOBR_RS27765 0.65 -1.3 396,173 - AZOBR_RS27765 0.65 -0.8 396,173 - AZOBR_RS27765 0.65 -0.1 396,493 + -0.3 396,493 + +0.0 396,660 + +1.5 396,798 + AZOBR_RS27770 0.14 -0.3 396,799 - AZOBR_RS27770 0.14 -0.1 396,870 + AZOBR_RS27770 0.18 -0.0 396,870 + AZOBR_RS27770 0.18 -0.1 396,870 + AZOBR_RS27770 0.18 +0.4 396,871 - AZOBR_RS27770 0.18 -0.8 396,871 - AZOBR_RS27770 0.18 -0.1 396,984 + AZOBR_RS27770 0.23 -1.2 396,984 + AZOBR_RS27770 0.23 -0.1 396,984 + AZOBR_RS27770 0.23 -1.8 396,984 + AZOBR_RS27770 0.23 -0.3 396,985 - AZOBR_RS27770 0.23 -0.6 396,985 - AZOBR_RS27770 0.23 -2.0 396,985 - AZOBR_RS27770 0.23 +0.5 396,985 - AZOBR_RS27770 0.23 -0.9 396,985 - AZOBR_RS27770 0.23 +0.7 396,985 - AZOBR_RS27770 0.23 -1.3 396,985 - AZOBR_RS27770 0.23 -1.3 396,985 - AZOBR_RS27770 0.23 +0.2 397,480 - AZOBR_RS27770 0.47 +0.9 397,617 + AZOBR_RS27770 0.54 +1.2 397,617 + AZOBR_RS27770 0.54 -1.3 397,618 - AZOBR_RS27770 0.54 -1.5 397,744 - AZOBR_RS27770 0.60 -0.1 397,758 + AZOBR_RS27770 0.61 -1.4 397,758 + AZOBR_RS27770 0.61 -0.1 397,758 + AZOBR_RS27770 0.61 -2.6 397,758 + AZOBR_RS27770 0.61 -0.3 397,759 - AZOBR_RS27770 0.61 +0.6 397,759 - AZOBR_RS27770 0.61 +0.4 397,776 + AZOBR_RS27770 0.62 -0.2 397,777 - AZOBR_RS27770 0.62 +0.7 397,777 - AZOBR_RS27770 0.62 -1.4 397,777 - AZOBR_RS27770 0.62 +0.8 397,777 - AZOBR_RS27770 0.62 -0.6 397,777 - AZOBR_RS27770 0.62 -1.0 398,442 + -0.2 398,442 + +1.6 398,442 + +0.4 398,443 - -0.2 398,586 + -0.4 398,587 - +0.3 398,587 - -0.5 398,684 - +0.1 398,684 - +0.9 398,872 + +0.9 398,872 + +0.5 398,873 - +0.0 398,878 - -0.1 398,878 - +0.2 398,901 + -1.5 398,902 - +1.5 398,923 + +1.3 398,931 + -0.2 398,932 - -1.2 399,016 - -1.2 399,016 - +0.8 399,042 + -0.2 399,042 + +0.2 399,042 + +0.3 399,043 - +2.8 399,043 - +0.2
Or see this region's nucleotide sequence