Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25535 and AZOBR_RS25540 are separated by 70 nucleotides AZOBR_RS25540 and AZOBR_RS25545 are separated by 380 nucleotides
AZOBR_RS25535: AZOBR_RS25535 - hypothetical protein, at 778,733 to 779,932
_RS25535
AZOBR_RS25540: AZOBR_RS25540 - putative acetyltransferase protein, at 780,003 to 781,178
_RS25540
AZOBR_RS25545: AZOBR_RS25545 - 3-ketoacyl-ACP reductase, at 781,559 to 782,299
_RS25545
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.098 kb on - strand, within AZOBR_RS25535 at 779.278 kb on - strand, within AZOBR_RS25535 at 779.278 kb on - strand, within AZOBR_RS25535 at 779.590 kb on - strand, within AZOBR_RS25535 at 779.590 kb on - strand, within AZOBR_RS25535 at 779.799 kb on + strand, within AZOBR_RS25535 at 780.025 kb on + strand at 780.025 kb on + strand at 780.026 kb on - strand at 780.026 kb on - strand at 780.241 kb on + strand, within AZOBR_RS25540 at 780.241 kb on + strand, within AZOBR_RS25540 at 780.242 kb on - strand, within AZOBR_RS25540 at 780.646 kb on + strand, within AZOBR_RS25540 at 780.734 kb on - strand, within AZOBR_RS25540 at 780.734 kb on - strand, within AZOBR_RS25540 at 780.763 kb on + strand, within AZOBR_RS25540 at 780.779 kb on - strand, within AZOBR_RS25540 at 780.779 kb on - strand, within AZOBR_RS25540 at 781.102 kb on + strand at 781.109 kb on - strand at 781.109 kb on - strand at 781.109 kb on - strand at 781.204 kb on + strand at 781.204 kb on + strand at 781.204 kb on + strand at 781.293 kb on + strand at 781.293 kb on + strand at 781.353 kb on + strand at 781.353 kb on + strand at 781.355 kb on + strand at 781.356 kb on - strand at 781.406 kb on + strand at 781.406 kb on + strand at 781.406 kb on + strand at 781.406 kb on + strand at 781.406 kb on + strand at 781.407 kb on - strand at 781.407 kb on - strand at 781.566 kb on + strand at 781.567 kb on - strand at 781.567 kb on - strand at 781.567 kb on - strand at 781.608 kb on + strand at 781.633 kb on - strand, within AZOBR_RS25545 at 781.842 kb on + strand, within AZOBR_RS25545 at 782.133 kb on + strand, within AZOBR_RS25545 at 782.133 kb on + strand, within AZOBR_RS25545 at 782.133 kb on + strand, within AZOBR_RS25545 at 782.134 kb on - strand, within AZOBR_RS25545
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 779,098 - AZOBR_RS25535 0.30 -0.4 779,278 - AZOBR_RS25535 0.45 -0.7 779,278 - AZOBR_RS25535 0.45 +1.0 779,590 - AZOBR_RS25535 0.71 -0.0 779,590 - AZOBR_RS25535 0.71 -1.1 779,799 + AZOBR_RS25535 0.89 +0.9 780,025 + +1.6 780,025 + +0.6 780,026 - -1.3 780,026 - -3.3 780,241 + AZOBR_RS25540 0.20 -0.7 780,241 + AZOBR_RS25540 0.20 +0.6 780,242 - AZOBR_RS25540 0.20 -0.4 780,646 + AZOBR_RS25540 0.55 -0.3 780,734 - AZOBR_RS25540 0.62 -0.5 780,734 - AZOBR_RS25540 0.62 +1.2 780,763 + AZOBR_RS25540 0.65 +1.5 780,779 - AZOBR_RS25540 0.66 +0.1 780,779 - AZOBR_RS25540 0.66 -0.7 781,102 + -1.0 781,109 - -0.6 781,109 - -1.9 781,109 - -1.0 781,204 + -0.1 781,204 + +0.7 781,204 + +1.0 781,293 + +1.9 781,293 + -0.0 781,353 + +0.7 781,353 + +0.1 781,355 + -0.2 781,356 - -1.0 781,406 + -0.1 781,406 + +0.9 781,406 + -0.6 781,406 + -2.4 781,406 + -0.4 781,407 - -0.7 781,407 - -0.5 781,566 + -0.6 781,567 - -0.0 781,567 - -0.7 781,567 - -0.8 781,608 + +0.1 781,633 - AZOBR_RS25545 0.10 -0.9 781,842 + AZOBR_RS25545 0.38 +0.5 782,133 + AZOBR_RS25545 0.77 +0.2 782,133 + AZOBR_RS25545 0.77 -0.0 782,133 + AZOBR_RS25545 0.77 -2.0 782,134 - AZOBR_RS25545 0.78 -0.9
Or see this region's nucleotide sequence