Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25465 and AZOBR_RS25470 are separated by 157 nucleotides AZOBR_RS25470 and AZOBR_RS25475 overlap by 4 nucleotides AZOBR_RS25475 and AZOBR_RS25480 overlap by 4 nucleotides
AZOBR_RS25465: AZOBR_RS25465 - sarcosine oxidase subunit beta, at 766,707 to 767,957
_RS25465
AZOBR_RS25470: AZOBR_RS25470 - ABC transporter permease, at 768,115 to 769,008
_RS25470
AZOBR_RS25475: AZOBR_RS25475 - amino acid ABC transporter permease, at 769,005 to 769,880
_RS25475
AZOBR_RS25480: AZOBR_RS25480 - sugar ABC transporter ATPase, at 769,877 to 770,647
_RS25480
Position (kb) 768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.188 kb on + strand, within AZOBR_RS25465 at 767.189 kb on - strand, within AZOBR_RS25465 at 767.680 kb on + strand, within AZOBR_RS25465 at 767.708 kb on - strand, within AZOBR_RS25465 at 767.947 kb on + strand at 767.947 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.160 kb on + strand at 768.505 kb on + strand, within AZOBR_RS25470 at 768.505 kb on + strand, within AZOBR_RS25470 at 768.506 kb on - strand, within AZOBR_RS25470 at 768.506 kb on - strand, within AZOBR_RS25470 at 768.781 kb on + strand, within AZOBR_RS25470 at 768.781 kb on + strand, within AZOBR_RS25470 at 768.782 kb on - strand, within AZOBR_RS25470 at 769.071 kb on + strand at 769.071 kb on + strand at 769.072 kb on - strand at 769.080 kb on + strand at 769.419 kb on + strand, within AZOBR_RS25475 at 769.420 kb on - strand, within AZOBR_RS25475 at 769.420 kb on - strand, within AZOBR_RS25475 at 769.593 kb on + strand, within AZOBR_RS25475 at 769.593 kb on + strand, within AZOBR_RS25475 at 769.788 kb on + strand, within AZOBR_RS25475 at 769.789 kb on - strand, within AZOBR_RS25475
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 767,188 + AZOBR_RS25465 0.38 +0.8 767,188 + AZOBR_RS25465 0.38 -1.8 767,188 + AZOBR_RS25465 0.38 -0.3 767,189 - AZOBR_RS25465 0.39 +0.3 767,680 + AZOBR_RS25465 0.78 -0.1 767,708 - AZOBR_RS25465 0.80 +0.9 767,947 + +0.9 767,947 + -0.2 768,160 + +0.1 768,160 + -0.7 768,160 + -1.5 768,160 + +0.7 768,160 + -0.3 768,505 + AZOBR_RS25470 0.44 -2.6 768,505 + AZOBR_RS25470 0.44 +0.1 768,506 - AZOBR_RS25470 0.44 -1.9 768,506 - AZOBR_RS25470 0.44 +0.6 768,781 + AZOBR_RS25470 0.74 -2.4 768,781 + AZOBR_RS25470 0.74 -1.4 768,782 - AZOBR_RS25470 0.75 -0.0 769,071 + +1.8 769,071 + -0.5 769,072 - -0.7 769,080 + -1.0 769,419 + AZOBR_RS25475 0.47 -0.6 769,420 - AZOBR_RS25475 0.47 -0.1 769,420 - AZOBR_RS25475 0.47 -0.1 769,593 + AZOBR_RS25475 0.67 -0.5 769,593 + AZOBR_RS25475 0.67 -0.5 769,788 + AZOBR_RS25475 0.89 +1.0 769,789 - AZOBR_RS25475 0.89 -0.7
Or see this region's nucleotide sequence